Ontology type: schema:ScholarlyArticle
2015-09
AUTHORSV. I. Butvilovskaya, M. V. Tsybulskaya, A. A. Tikhonov, V. O. Talibov, P. V. Belousov, A. Yu. Sazykin, A. M. Schwartz, S. A. Surzhikov, A. A. Stomakhin, O. N. Solopova, A. Yu. Rubina
ABSTRACTThe objective of this work was to obtain preparations of recombinant squamous-cell carcinoma antigens (serpins B3 and B4) and to investigate their interactions with different monoclonal antibodies using hydrogel-based microarrays (biochips). Two genetic constructs encoding full-length serpin B3 and serpin B4 molecules were created to produce recombinant SPB3 and SPB4 proteins carrying a N-terminal His6-tag. Monoclonal antibodies against serpin B3 (H3, C5, H5, H81, and G9) were also obtained. An experimental gel-based biological microchip was designed to contain gel elements that carry immobilized antibodies against SPB3, immobilized commercial monoclonal SCC107 and SCC140 antibodies against squamous-cell carcinoma antigen (SCCA), and gel elements with immobilized SPB3 or SPB4. Judging by the specificity of recombinant SPB3 and SPB4, which bind to monoclonal antibodies against SCCA and, according to the manufacturer’s data, can recognize conformational epitopes of both SPB3 and SPB4, it was concluded that the obtained recombinant serpins had the correct tertiary structure. A biochip-based direct immunoassay showed that SPB4 could bind effectively only to SCC107 and SCC140 antibodies, while SPB3 interacted specifically not only with these antibodies, but also with H3 and C5 monoclonal antibodies. Using biochip-based sandwich immunoassay, a pair of monoclonal antibodies SCC107/C5 that interacted specifically with serpin B3 but did not interact with serpin B4 was identified. Thus, it has been demonstrated that serpin B3 can be selectively determined in the presence of highly homologous serpin B4 using a biochip-based assay. More... »
PAGES705-713
http://scigraph.springernature.com/pub.10.1134/s0026893315050040
DOIhttp://dx.doi.org/10.1134/s0026893315050040
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1017356375
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biochemistry and Cell Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Plant Biology",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Butvilovskaya",
"givenName": "V. I.",
"id": "sg:person.01064644664.16",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01064644664.16"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Tsybulskaya",
"givenName": "M. V.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Higher Chemical College of the Russian Academy of Sciences, Mendeleyev University of Chemical Technology, 125047, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.4886.2",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"Higher Chemical College of the Russian Academy of Sciences, Mendeleyev University of Chemical Technology, 125047, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Tikhonov",
"givenName": "A. A.",
"id": "sg:person.011601127733.10",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011601127733.10"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Talibov",
"givenName": "V. O.",
"id": "sg:person.01057166165.57",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01057166165.57"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biology, Lomonosov Moscow State University, 119234, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.14476.30",
"name": [
"Department of Biology, Lomonosov Moscow State University, 119234, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Belousov",
"givenName": "P. V.",
"id": "sg:person.01175400147.94",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01175400147.94"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biology, Lomonosov Moscow State University, 119234, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.14476.30",
"name": [
"Department of Biology, Lomonosov Moscow State University, 119234, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Sazykin",
"givenName": "A. Yu.",
"id": "sg:person.01206065463.13",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01206065463.13"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Schwartz",
"givenName": "A. M.",
"id": "sg:person.0716320635.51",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0716320635.51"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Surzhikov",
"givenName": "S. A.",
"id": "sg:person.01362317204.91",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362317204.91"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Stomakhin",
"givenName": "A. A.",
"id": "sg:person.01210047302.80",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01210047302.80"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Research Center for Molecular Diagnostics and Therapy, 117638, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.419070.b",
"name": [
"Russian Research Center for Molecular Diagnostics and Therapy, 117638, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Solopova",
"givenName": "O. N.",
"id": "sg:person.01076621137.53",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01076621137.53"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia",
"id": "http://www.grid.ac/institutes/grid.418899.5",
"name": [
"Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991, Moscow, Russia"
],
"type": "Organization"
},
"familyName": "Rubina",
"givenName": "A. Yu.",
"id": "sg:person.01213403026.56",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213403026.56"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1186/gb-2006-7-5-216",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039520278",
"https://doi.org/10.1186/gb-2006-7-5-216"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1134/s1068162013060101",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012450094",
"https://doi.org/10.1134/s1068162013060101"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10517-009-0591-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025895960",
"https://doi.org/10.1007/s10517-009-0591-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1054/bjoc.1999.1028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040923728",
"https://doi.org/10.1054/bjoc.1999.1028"
],
"type": "CreativeWork"
}
],
"datePublished": "2015-09",
"datePublishedReg": "2015-09-01",
"description": "The objective of this work was to obtain preparations of recombinant squamous-cell carcinoma antigens (serpins B3 and B4) and to investigate their interactions with different monoclonal antibodies using hydrogel-based microarrays (biochips). Two genetic constructs encoding full-length serpin B3 and serpin B4 molecules were created to produce recombinant SPB3 and SPB4 proteins carrying a N-terminal His6-tag. Monoclonal antibodies against serpin B3 (H3, C5, H5, H81, and G9) were also obtained. An experimental gel-based biological microchip was designed to contain gel elements that carry immobilized antibodies against SPB3, immobilized commercial monoclonal SCC107 and SCC140 antibodies against squamous-cell carcinoma antigen (SCCA), and gel elements with immobilized SPB3 or SPB4. Judging by the specificity of recombinant SPB3 and SPB4, which bind to monoclonal antibodies against SCCA and, according to the manufacturer\u2019s data, can recognize conformational epitopes of both SPB3 and SPB4, it was concluded that the obtained recombinant serpins had the correct tertiary structure. A biochip-based direct immunoassay showed that SPB4 could bind effectively only to SCC107 and SCC140 antibodies, while SPB3 interacted specifically not only with these antibodies, but also with H3 and C5 monoclonal antibodies. Using biochip-based sandwich immunoassay, a pair of monoclonal antibodies SCC107/C5 that interacted specifically with serpin B3 but did not interact with serpin B4 was identified. Thus, it has been demonstrated that serpin B3 can be selectively determined in the presence of highly homologous serpin B4 using a biochip-based assay.",
"genre": "article",
"id": "sg:pub.10.1134/s0026893315050040",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1371988",
"issn": [
"0026-8933",
"1608-3245"
],
"name": "Molecular Biology",
"publisher": "Pleiades Publishing",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "49"
}
],
"keywords": [
"squamous cell carcinoma antigen",
"monoclonal antibodies",
"carcinoma antigen",
"Serpin B3",
"C5 monoclonal antibody",
"different monoclonal antibodies",
"antibodies",
"conformational epitopes",
"B4",
"antigen",
"immunoassay",
"direct immunoassay",
"B3",
"microarrays",
"sandwich immunoassay",
"terminal His6 tag",
"biological microchips",
"epitopes",
"correct tertiary structure",
"immobilized antibodies",
"assays",
"genetic constructs",
"recombinant serpins",
"His6 tag",
"specificity",
"tertiary structure",
"data",
"protein",
"serpins",
"specific interactions",
"preparation",
"C5",
"objective",
"presence",
"gel elements",
"H3",
"investigation",
"interaction",
"constructs",
"molecules",
"elements",
"pairs",
"hydrogels",
"manufacturer data",
"structure",
"work",
"microchip"
],
"name": "Preparation of recombinant serpins B3 and B4 and investigation of their specific interactions with antibodies using hydrogel-based microarrays",
"pagination": "705-713",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1017356375"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1134/s0026893315050040"
]
}
],
"sameAs": [
"https://doi.org/10.1134/s0026893315050040",
"https://app.dimensions.ai/details/publication/pub.1017356375"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-10T10:10",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220509/entities/gbq_results/article/article_661.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1134/s0026893315050040"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1134/s0026893315050040'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1134/s0026893315050040'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1134/s0026893315050040'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1134/s0026893315050040'
This table displays all metadata directly associated to this object as RDF triples.
208 TRIPLES
22 PREDICATES
79 URIs
65 LITERALS
6 BLANK NODES