Structure and Organization of a 25 Kbp Region of the Genome of the Photosynthetic Green Sulfur Bacterium Chlorobium Vibrioforme Containing ... View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

1998-12

AUTHORS

Bent L. Petersen, Marianne G. Møller, Bjarne M. Stummann, Knud W. Henningsen

ABSTRACT

A region comprising approximately 25 kbp of the genome of the strictly anaerobic and obligate photosynthetic green sulfur bacterium Chlorobium vibrioforme has been mapped, subcloned and partly sequenced. Approximately 15 kbp have been sequenced in it's entirety and three genes with significant homology and feature similarity to the bchI, -D and -H genes and the chlI, -D and -H genes of Rhodobacter and Synechocystis strain PCC6803, respectively, which encode magnesium chelatase subunits, have been identified. Magnesium chelatase catalyzes the insertion of Mg2+ into protoporphyrin IX, and is the first enzyme unique to the (bacterio)chlorophyll specific branch of the porphyrin biosynthetic pathway. The organization of the three Mg-chelatase encoding genes is unique to Chlorobium and suggests that the magnesium chelatase of C. vibrioforme is encoded by a single operon. The analyzed 25 kbp region contains five additional open reading frames, two of which display significant homology and feature similarity to genes encoding lipoamide dehydrogenase and genes with function in purine synthesis, and another three display significant homology to open reading frames with unknown function in distantly related bacteria. Putative E. coli sigma 70-like promoter sequences, ribosome binding sequences and rho-independent transcriptional stop signals within the sequenced 15 kbp region are related to the identified genes and orfs. Southern analysis, restriction mapping and partial sequencing of the remaining ca. 10 kbp of the analyzed 25 kbp region have shown that this part includes the hemA, -C, -D and -B genes (MOBERG and AVISSAR 1994), which encode enzymes with function in the early part of the biosynthetic pathway of porphyrins. More... »

PAGES

131-142

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1111/j.1601-5223.1998.00131.x

DOI

http://dx.doi.org/10.1111/j.1601-5223.1998.00131.x

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1001920748

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/10022081


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chlorobi", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosome Mapping", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cloning, Molecular", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA Primers", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Lyases", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nucleic Acid Conformation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Open Reading Frames", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Department of Ecology and Molecular Biology, Royal Veterinary and Agricultural University, Frederiksberg, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Petersen", 
        "givenName": "Bent L.", 
        "id": "sg:person.01126040223.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126040223.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Department of Ecology and Molecular Biology, Royal Veterinary and Agricultural University, Frederiksberg, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "M\u00f8ller", 
        "givenName": "Marianne G.", 
        "id": "sg:person.014000264303.95", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014000264303.95"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Department of Ecology and Molecular Biology, Royal Veterinary and Agricultural University, Frederiksberg, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stummann", 
        "givenName": "Bjarne M.", 
        "id": "sg:person.016170605703.54", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016170605703.54"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Department of Ecology and Molecular Biology, Royal Veterinary and Agricultural University, Frederiksberg, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Henningsen", 
        "givenName": "Knud W.", 
        "id": "sg:person.0717526447.08", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0717526447.08"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/0003-9861(89)90309-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000738798"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/bbrc.1995.2481", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001078215"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00763177", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001169941", 
          "https://doi.org/10.1007/bf00763177"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1432-1033.1996.00438.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001700969"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00020818", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005723803", 
          "https://doi.org/10.1007/bf00020818"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00020818", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005723803", 
          "https://doi.org/10.1007/bf00020818"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02174026", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005925725", 
          "https://doi.org/10.1007/bf02174026"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02174026", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005925725", 
          "https://doi.org/10.1007/bf02174026"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0092-8674(84)90428-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009707407"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/21.11.2541", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010673952"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1005913315905", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011551902", 
          "https://doi.org/10.1023/a:1005913315905"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00334364", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015299876", 
          "https://doi.org/10.1007/bf00334364"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00262999", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017537027", 
          "https://doi.org/10.1007/bf00262999"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00262999", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017537027", 
          "https://doi.org/10.1007/bf00262999"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1365-313x.1997.12050981.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019605810"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s004380050394", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019614444", 
          "https://doi.org/10.1007/s004380050394"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s004380050394", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019614444", 
          "https://doi.org/10.1007/s004380050394"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/13.4.1303", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019980089"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/352172a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020159789", 
          "https://doi.org/10.1038/352172a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.271.28.16662", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023942323"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.92.6.1941", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024735008"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00406457", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025965162", 
          "https://doi.org/10.1007/bf00406457"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00406457", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025965162", 
          "https://doi.org/10.1007/bf00406457"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj2550035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026668128"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj2550035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026668128"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.116.2.605", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027500030"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.98.1.408", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028130414"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02184166", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033879715", 
          "https://doi.org/10.1007/bf02184166"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02184166", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033879715", 
          "https://doi.org/10.1007/bf02184166"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.111.1.61", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035053909"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0014-5793(92)80514-h", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036300221"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj2990277", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036957907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj2990277", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036957907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0968-0004(90)90281-f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039483462"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0968-0004(90)90281-f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039483462"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1111/j.1601-5223.1996.00093.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043214511", 
          "https://doi.org/10.1111/j.1601-5223.1996.00093.x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj3270321", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046983420"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj3270321", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046983420"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00330558", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050230650", 
          "https://doi.org/10.1007/bf00330558"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0014-5793(85)81326-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051439242"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.271.14.8176", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051675130"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.94.24.13351", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052218105"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/00221287-139-5-897", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060368737"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.273.5278.1058", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062553939"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.275.5305.1489", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062555993"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.172.3.1656-1659.1990", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062718745"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.173.14.4247-4253.1991", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062719522"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.175.8.2414-2422.1993", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062722571"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.176.1.1-6.1994", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062722625"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.177.19.5480-5484.1995", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062724154"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/j.1460-2075.1990.tb08248.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1078397670"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1079446395", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/j.1460-2075.1993.tb06048.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1082792644"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1083208862", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1998-12", 
    "datePublishedReg": "1998-12-01", 
    "description": "A region comprising approximately 25 kbp of the genome of the strictly anaerobic and obligate photosynthetic green sulfur bacterium Chlorobium vibrioforme has been mapped, subcloned and partly sequenced. Approximately 15 kbp have been sequenced in it's entirety and three genes with significant homology and feature similarity to the bchI, -D and -H genes and the chlI, -D and -H genes of Rhodobacter and Synechocystis strain PCC6803, respectively, which encode magnesium chelatase subunits, have been identified. Magnesium chelatase catalyzes the insertion of Mg2+ into protoporphyrin IX, and is the first enzyme unique to the (bacterio)chlorophyll specific branch of the porphyrin biosynthetic pathway. The organization of the three Mg-chelatase encoding genes is unique to Chlorobium and suggests that the magnesium chelatase of C. vibrioforme is encoded by a single operon. The analyzed 25 kbp region contains five additional open reading frames, two of which display significant homology and feature similarity to genes encoding lipoamide dehydrogenase and genes with function in purine synthesis, and another three display significant homology to open reading frames with unknown function in distantly related bacteria. Putative E. coli sigma 70-like promoter sequences, ribosome binding sequences and rho-independent transcriptional stop signals within the sequenced 15 kbp region are related to the identified genes and orfs. Southern analysis, restriction mapping and partial sequencing of the remaining ca. 10 kbp of the analyzed 25 kbp region have shown that this part includes the hemA, -C, -D and -B genes (MOBERG and AVISSAR 1994), which encode enzymes with function in the early part of the biosynthetic pathway of porphyrins.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1111/j.1601-5223.1998.00131.x", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1017631", 
        "issn": [
          "0018-0661", 
          "1601-5223"
        ], 
        "name": "Hereditas", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "129"
      }
    ], 
    "name": "Structure and Organization of a 25 Kbp Region of the Genome of the Photosynthetic Green Sulfur Bacterium Chlorobium Vibrioforme Containing Mg\u2010Chelatase Encoding Genes", 
    "pagination": "131-142", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "09263527642e37b4b25ddb3d47656b46227e0480372ec36e380b3b155fb3706a"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "10022081"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "0374654"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1111/j.1601-5223.1998.00131.x"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1001920748"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1111/j.1601-5223.1998.00131.x", 
      "https://app.dimensions.ai/details/publication/pub.1001920748"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T18:53", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8678_00000384.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://onlinelibrary.wiley.com/doi/10.1111/j.1601-5223.1998.00131.x/abstract"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1111/j.1601-5223.1998.00131.x'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1111/j.1601-5223.1998.00131.x'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1111/j.1601-5223.1998.00131.x'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1111/j.1601-5223.1998.00131.x'


 

This table displays all metadata directly associated to this object as RDF triples.

280 TRIPLES      21 PREDICATES      85 URIs      33 LITERALS      21 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1111/j.1601-5223.1998.00131.x schema:about N16ffca730f984d1daba27b061f8cfbc2
2 N4e26127a2a104e4d8882927d8dd36948
3 N63de6e2b08af40c9a7deb5b17a90202a
4 N72749935ab82425c89eb486df58b5a91
5 N81f3d17429a34032819a9473118a244a
6 N8e5d546043da406c818e719b7328bbc5
7 N8eeba832b6ee493b8ae536573087de86
8 N94ea9742d1ae4855b81557d12d0e8bf2
9 N9e064ffe05304502b2bfa1d61656ffbd
10 Nad76ea324bbd401bb621c7f5c23ede10
11 Nb9865ac45fb14a86b1c5f90ee1b304f0
12 Nc4e7a035721244df8c3a5ed58af9bb91
13 anzsrc-for:06
14 anzsrc-for:0604
15 schema:author N40536daba3e546318ba0791f94848e10
16 schema:citation sg:pub.10.1007/bf00020818
17 sg:pub.10.1007/bf00262999
18 sg:pub.10.1007/bf00330558
19 sg:pub.10.1007/bf00334364
20 sg:pub.10.1007/bf00406457
21 sg:pub.10.1007/bf00763177
22 sg:pub.10.1007/bf02174026
23 sg:pub.10.1007/bf02184166
24 sg:pub.10.1007/s004380050394
25 sg:pub.10.1023/a:1005913315905
26 sg:pub.10.1038/352172a0
27 sg:pub.10.1111/j.1601-5223.1996.00093.x
28 https://app.dimensions.ai/details/publication/pub.1079446395
29 https://app.dimensions.ai/details/publication/pub.1083208862
30 https://doi.org/10.1002/j.1460-2075.1990.tb08248.x
31 https://doi.org/10.1002/j.1460-2075.1993.tb06048.x
32 https://doi.org/10.1006/bbrc.1995.2481
33 https://doi.org/10.1016/0003-9861(89)90309-3
34 https://doi.org/10.1016/0014-5793(85)81326-0
35 https://doi.org/10.1016/0014-5793(92)80514-h
36 https://doi.org/10.1016/0092-8674(84)90428-8
37 https://doi.org/10.1016/0968-0004(90)90281-f
38 https://doi.org/10.1042/bj2550035
39 https://doi.org/10.1042/bj2990277
40 https://doi.org/10.1042/bj3270321
41 https://doi.org/10.1046/j.1365-313x.1997.12050981.x
42 https://doi.org/10.1073/pnas.92.6.1941
43 https://doi.org/10.1073/pnas.94.24.13351
44 https://doi.org/10.1074/jbc.271.14.8176
45 https://doi.org/10.1074/jbc.271.28.16662
46 https://doi.org/10.1093/nar/13.4.1303
47 https://doi.org/10.1093/nar/21.11.2541
48 https://doi.org/10.1099/00221287-139-5-897
49 https://doi.org/10.1104/pp.111.1.61
50 https://doi.org/10.1104/pp.116.2.605
51 https://doi.org/10.1104/pp.98.1.408
52 https://doi.org/10.1111/j.1432-1033.1996.00438.x
53 https://doi.org/10.1126/science.273.5278.1058
54 https://doi.org/10.1126/science.275.5305.1489
55 https://doi.org/10.1128/jb.172.3.1656-1659.1990
56 https://doi.org/10.1128/jb.173.14.4247-4253.1991
57 https://doi.org/10.1128/jb.175.8.2414-2422.1993
58 https://doi.org/10.1128/jb.176.1.1-6.1994
59 https://doi.org/10.1128/jb.177.19.5480-5484.1995
60 schema:datePublished 1998-12
61 schema:datePublishedReg 1998-12-01
62 schema:description A region comprising approximately 25 kbp of the genome of the strictly anaerobic and obligate photosynthetic green sulfur bacterium Chlorobium vibrioforme has been mapped, subcloned and partly sequenced. Approximately 15 kbp have been sequenced in it's entirety and three genes with significant homology and feature similarity to the bchI, -D and -H genes and the chlI, -D and -H genes of Rhodobacter and Synechocystis strain PCC6803, respectively, which encode magnesium chelatase subunits, have been identified. Magnesium chelatase catalyzes the insertion of Mg2+ into protoporphyrin IX, and is the first enzyme unique to the (bacterio)chlorophyll specific branch of the porphyrin biosynthetic pathway. The organization of the three Mg-chelatase encoding genes is unique to Chlorobium and suggests that the magnesium chelatase of C. vibrioforme is encoded by a single operon. The analyzed 25 kbp region contains five additional open reading frames, two of which display significant homology and feature similarity to genes encoding lipoamide dehydrogenase and genes with function in purine synthesis, and another three display significant homology to open reading frames with unknown function in distantly related bacteria. Putative E. coli sigma 70-like promoter sequences, ribosome binding sequences and rho-independent transcriptional stop signals within the sequenced 15 kbp region are related to the identified genes and orfs. Southern analysis, restriction mapping and partial sequencing of the remaining ca. 10 kbp of the analyzed 25 kbp region have shown that this part includes the hemA, -C, -D and -B genes (MOBERG and AVISSAR 1994), which encode enzymes with function in the early part of the biosynthetic pathway of porphyrins.
63 schema:genre research_article
64 schema:inLanguage en
65 schema:isAccessibleForFree true
66 schema:isPartOf Na306a5fd1e494d14a8feb2fa1f417354
67 Nf384bfc7fcf54702b318528f623d884a
68 sg:journal.1017631
69 schema:name Structure and Organization of a 25 Kbp Region of the Genome of the Photosynthetic Green Sulfur Bacterium Chlorobium Vibrioforme Containing Mg‐Chelatase Encoding Genes
70 schema:pagination 131-142
71 schema:productId N514a5e31c6cb43659ae3449904bb9dbf
72 N809a7feaf7934a78a5faa13072acd78c
73 Na318723218a4412ca8eb00e09e610049
74 Nbdd259a3ef144909bf4478ad2f5413ac
75 Nc83f5a841ca04721971c537dee6ac4f3
76 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001920748
77 https://doi.org/10.1111/j.1601-5223.1998.00131.x
78 schema:sdDatePublished 2019-04-10T18:53
79 schema:sdLicense https://scigraph.springernature.com/explorer/license/
80 schema:sdPublisher N5ac1f47a0a1346bf822e12e8b89c8e91
81 schema:url http://onlinelibrary.wiley.com/doi/10.1111/j.1601-5223.1998.00131.x/abstract
82 sgo:license sg:explorer/license/
83 sgo:sdDataset articles
84 rdf:type schema:ScholarlyArticle
85 N0970a4df1a134e08894b49b320bd8b22 rdf:first sg:person.014000264303.95
86 rdf:rest Nc7af91faab9b4c28805637a8b3b96a6f
87 N16ffca730f984d1daba27b061f8cfbc2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Chromosome Mapping
89 rdf:type schema:DefinedTerm
90 N40536daba3e546318ba0791f94848e10 rdf:first sg:person.01126040223.41
91 rdf:rest N0970a4df1a134e08894b49b320bd8b22
92 N4e26127a2a104e4d8882927d8dd36948 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
93 schema:name Chlorobi
94 rdf:type schema:DefinedTerm
95 N514a5e31c6cb43659ae3449904bb9dbf schema:name doi
96 schema:value 10.1111/j.1601-5223.1998.00131.x
97 rdf:type schema:PropertyValue
98 N5ac1f47a0a1346bf822e12e8b89c8e91 schema:name Springer Nature - SN SciGraph project
99 rdf:type schema:Organization
100 N63de6e2b08af40c9a7deb5b17a90202a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
101 schema:name Open Reading Frames
102 rdf:type schema:DefinedTerm
103 N72749935ab82425c89eb486df58b5a91 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
104 schema:name Cloning, Molecular
105 rdf:type schema:DefinedTerm
106 N7df0625ecab44133bc593a444648dfc1 rdf:first sg:person.0717526447.08
107 rdf:rest rdf:nil
108 N809a7feaf7934a78a5faa13072acd78c schema:name readcube_id
109 schema:value 09263527642e37b4b25ddb3d47656b46227e0480372ec36e380b3b155fb3706a
110 rdf:type schema:PropertyValue
111 N81f3d17429a34032819a9473118a244a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
112 schema:name Molecular Sequence Data
113 rdf:type schema:DefinedTerm
114 N8e5d546043da406c818e719b7328bbc5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
115 schema:name Amino Acid Sequence
116 rdf:type schema:DefinedTerm
117 N8eeba832b6ee493b8ae536573087de86 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
118 schema:name Nucleic Acid Conformation
119 rdf:type schema:DefinedTerm
120 N94ea9742d1ae4855b81557d12d0e8bf2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
121 schema:name DNA Primers
122 rdf:type schema:DefinedTerm
123 N9e064ffe05304502b2bfa1d61656ffbd schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Lyases
125 rdf:type schema:DefinedTerm
126 Na306a5fd1e494d14a8feb2fa1f417354 schema:volumeNumber 129
127 rdf:type schema:PublicationVolume
128 Na318723218a4412ca8eb00e09e610049 schema:name dimensions_id
129 schema:value pub.1001920748
130 rdf:type schema:PropertyValue
131 Nad76ea324bbd401bb621c7f5c23ede10 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Genome, Bacterial
133 rdf:type schema:DefinedTerm
134 Nb9865ac45fb14a86b1c5f90ee1b304f0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
135 schema:name DNA, Bacterial
136 rdf:type schema:DefinedTerm
137 Nbdd259a3ef144909bf4478ad2f5413ac schema:name nlm_unique_id
138 schema:value 0374654
139 rdf:type schema:PropertyValue
140 Nc4e7a035721244df8c3a5ed58af9bb91 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
141 schema:name Base Sequence
142 rdf:type schema:DefinedTerm
143 Nc7af91faab9b4c28805637a8b3b96a6f rdf:first sg:person.016170605703.54
144 rdf:rest N7df0625ecab44133bc593a444648dfc1
145 Nc83f5a841ca04721971c537dee6ac4f3 schema:name pubmed_id
146 schema:value 10022081
147 rdf:type schema:PropertyValue
148 Nf384bfc7fcf54702b318528f623d884a schema:issueNumber 2
149 rdf:type schema:PublicationIssue
150 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
151 schema:name Biological Sciences
152 rdf:type schema:DefinedTerm
153 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
154 schema:name Genetics
155 rdf:type schema:DefinedTerm
156 sg:journal.1017631 schema:issn 0018-0661
157 1601-5223
158 schema:name Hereditas
159 rdf:type schema:Periodical
160 sg:person.01126040223.41 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
161 schema:familyName Petersen
162 schema:givenName Bent L.
163 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126040223.41
164 rdf:type schema:Person
165 sg:person.014000264303.95 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
166 schema:familyName Møller
167 schema:givenName Marianne G.
168 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014000264303.95
169 rdf:type schema:Person
170 sg:person.016170605703.54 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
171 schema:familyName Stummann
172 schema:givenName Bjarne M.
173 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016170605703.54
174 rdf:type schema:Person
175 sg:person.0717526447.08 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
176 schema:familyName Henningsen
177 schema:givenName Knud W.
178 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0717526447.08
179 rdf:type schema:Person
180 sg:pub.10.1007/bf00020818 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005723803
181 https://doi.org/10.1007/bf00020818
182 rdf:type schema:CreativeWork
183 sg:pub.10.1007/bf00262999 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017537027
184 https://doi.org/10.1007/bf00262999
185 rdf:type schema:CreativeWork
186 sg:pub.10.1007/bf00330558 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050230650
187 https://doi.org/10.1007/bf00330558
188 rdf:type schema:CreativeWork
189 sg:pub.10.1007/bf00334364 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015299876
190 https://doi.org/10.1007/bf00334364
191 rdf:type schema:CreativeWork
192 sg:pub.10.1007/bf00406457 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025965162
193 https://doi.org/10.1007/bf00406457
194 rdf:type schema:CreativeWork
195 sg:pub.10.1007/bf00763177 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001169941
196 https://doi.org/10.1007/bf00763177
197 rdf:type schema:CreativeWork
198 sg:pub.10.1007/bf02174026 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005925725
199 https://doi.org/10.1007/bf02174026
200 rdf:type schema:CreativeWork
201 sg:pub.10.1007/bf02184166 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033879715
202 https://doi.org/10.1007/bf02184166
203 rdf:type schema:CreativeWork
204 sg:pub.10.1007/s004380050394 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019614444
205 https://doi.org/10.1007/s004380050394
206 rdf:type schema:CreativeWork
207 sg:pub.10.1023/a:1005913315905 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011551902
208 https://doi.org/10.1023/a:1005913315905
209 rdf:type schema:CreativeWork
210 sg:pub.10.1038/352172a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020159789
211 https://doi.org/10.1038/352172a0
212 rdf:type schema:CreativeWork
213 sg:pub.10.1111/j.1601-5223.1996.00093.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1043214511
214 https://doi.org/10.1111/j.1601-5223.1996.00093.x
215 rdf:type schema:CreativeWork
216 https://app.dimensions.ai/details/publication/pub.1079446395 schema:CreativeWork
217 https://app.dimensions.ai/details/publication/pub.1083208862 schema:CreativeWork
218 https://doi.org/10.1002/j.1460-2075.1990.tb08248.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1078397670
219 rdf:type schema:CreativeWork
220 https://doi.org/10.1002/j.1460-2075.1993.tb06048.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1082792644
221 rdf:type schema:CreativeWork
222 https://doi.org/10.1006/bbrc.1995.2481 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001078215
223 rdf:type schema:CreativeWork
224 https://doi.org/10.1016/0003-9861(89)90309-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000738798
225 rdf:type schema:CreativeWork
226 https://doi.org/10.1016/0014-5793(85)81326-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051439242
227 rdf:type schema:CreativeWork
228 https://doi.org/10.1016/0014-5793(92)80514-h schema:sameAs https://app.dimensions.ai/details/publication/pub.1036300221
229 rdf:type schema:CreativeWork
230 https://doi.org/10.1016/0092-8674(84)90428-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009707407
231 rdf:type schema:CreativeWork
232 https://doi.org/10.1016/0968-0004(90)90281-f schema:sameAs https://app.dimensions.ai/details/publication/pub.1039483462
233 rdf:type schema:CreativeWork
234 https://doi.org/10.1042/bj2550035 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026668128
235 rdf:type schema:CreativeWork
236 https://doi.org/10.1042/bj2990277 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036957907
237 rdf:type schema:CreativeWork
238 https://doi.org/10.1042/bj3270321 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046983420
239 rdf:type schema:CreativeWork
240 https://doi.org/10.1046/j.1365-313x.1997.12050981.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1019605810
241 rdf:type schema:CreativeWork
242 https://doi.org/10.1073/pnas.92.6.1941 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024735008
243 rdf:type schema:CreativeWork
244 https://doi.org/10.1073/pnas.94.24.13351 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052218105
245 rdf:type schema:CreativeWork
246 https://doi.org/10.1074/jbc.271.14.8176 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051675130
247 rdf:type schema:CreativeWork
248 https://doi.org/10.1074/jbc.271.28.16662 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023942323
249 rdf:type schema:CreativeWork
250 https://doi.org/10.1093/nar/13.4.1303 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019980089
251 rdf:type schema:CreativeWork
252 https://doi.org/10.1093/nar/21.11.2541 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010673952
253 rdf:type schema:CreativeWork
254 https://doi.org/10.1099/00221287-139-5-897 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060368737
255 rdf:type schema:CreativeWork
256 https://doi.org/10.1104/pp.111.1.61 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035053909
257 rdf:type schema:CreativeWork
258 https://doi.org/10.1104/pp.116.2.605 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027500030
259 rdf:type schema:CreativeWork
260 https://doi.org/10.1104/pp.98.1.408 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028130414
261 rdf:type schema:CreativeWork
262 https://doi.org/10.1111/j.1432-1033.1996.00438.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1001700969
263 rdf:type schema:CreativeWork
264 https://doi.org/10.1126/science.273.5278.1058 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062553939
265 rdf:type schema:CreativeWork
266 https://doi.org/10.1126/science.275.5305.1489 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062555993
267 rdf:type schema:CreativeWork
268 https://doi.org/10.1128/jb.172.3.1656-1659.1990 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062718745
269 rdf:type schema:CreativeWork
270 https://doi.org/10.1128/jb.173.14.4247-4253.1991 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062719522
271 rdf:type schema:CreativeWork
272 https://doi.org/10.1128/jb.175.8.2414-2422.1993 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062722571
273 rdf:type schema:CreativeWork
274 https://doi.org/10.1128/jb.176.1.1-6.1994 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062722625
275 rdf:type schema:CreativeWork
276 https://doi.org/10.1128/jb.177.19.5480-5484.1995 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062724154
277 rdf:type schema:CreativeWork
278 https://www.grid.ac/institutes/grid.5254.6 schema:alternateName University of Copenhagen
279 schema:name Department of Ecology and Molecular Biology, Royal Veterinary and Agricultural University, Frederiksberg, Denmark
280 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...