Genome-wide indel/SSR scanning reveals significant loci associated with excellent agronomic traits of a cabbage (Brassica oleracea) elite parental line ‘01–20’ View Full Text


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Article Info

DATE

2017-02-06

AUTHORS

Honghao Lv, Qingbiao Wang, Fengqing Han, Xing Liu, Zhiyuan Fang, Limei Yang, Mu Zhuang, Yumei Liu, Zhansheng Li, Yangyong Zhang

ABSTRACT

Elite parental lines are of great significance to crop breeding. To discover unique genomic loci associated with excellent economic traits in the elite cabbage inbred-line '01-20', we performed comparisons of phenotypes as well as whole-genome insertion-deletion/simple sequence repeat loci between '01-20' and each of its five sister lines. '01-20' has a range of excellent agronomic traits, including early-maturing, and improvements in plant type and leaf colour. Eight unique loci were discovered for '01-20' and '01-07-258', another elite line similar to '01-20' at the whole-genome level. In addition, two excellent double-haploid lines derived from a cross of '01-20' also inherited these loci. Based on the quantitative trait locus association results, five of these loci were found to be associated with important agronomic traits, which could explain why the elite parent '01-20' possesses greener outer leaves, a more compact and upright plant-type, rounder head, shorter core length, and better taste. Additionally, some of these loci have clustering effects for quantitative trait loci associated with different traits; therefore, important genes in these regions were analysed. The obtained results should enable marker-assisted multi-trait selection at the whole-genome level in cabbage breeding and provide insights into significant genome loci and their breeding effects. More... »

PAGES

41696

References to SciGraph publications

  • 2000-12. A retrospective analysis of spring barley germplasm development from `foundation genotypes' to currently successful cultivars in MOLECULAR BREEDING
  • 2014-01-18. Linkage map construction using InDel and SSR markers and QTL analysis of heading traits in Brassica oleracea var. capitata L. in MOLECULAR BREEDING
  • 2005-04-20. Allelic reduction and genetic shift in the Canadian hard red spring wheat germplasm released from 1845 to 2004 in THEORETICAL AND APPLIED GENETICS
  • 2014-01-29. Marker–trait association analysis of kernel hardness and related agronomic traits in a core collection of wheat lines in MOLECULAR BREEDING
  • 2011-09-06. Dissecting the genetic architecture of agronomic traits in multiple segregating populations in rapeseed (Brassica napus L.) in THEORETICAL AND APPLIED GENETICS
  • 2002-08-06. Simultaneous improvement for four quality traits of Zhenshan 97, an elite parent of hybrid rice, by molecular marker-assisted selection in THEORETICAL AND APPLIED GENETICS
  • 2013-08-14. Development of InDel markers linked to Fusarium wilt resistance in cabbage in MOLECULAR BREEDING
  • 2005-05. Genetic diversity trend of common wheat (Triticum aestivum L.) in China revealed with AFLP markers in GENETIC RESOURCES AND CROP EVOLUTION
  • 2006-01. Genetic Diversity and Core Collection Evaluations in Common Wheat Germplasm from the Northwestern Spring Wheat Region in China in MOLECULAR BREEDING
  • 2011-03-08. Diversity and selective sweep in the OsAMT1;1 genomic region of rice in BMC EVOLUTIONARY BIOLOGY
  • 2010-10-24. Genome-wide patterns of genetic variation among elite maize inbred lines in NATURE GENETICS
  • 2000-02. Parental contribution and coefficient of coancestry among maize inbreds: pedigree, RFLP, and SSR data in THEORETICAL AND APPLIED GENETICS
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    URI

    http://scigraph.springernature.com/pub.10.1038/srep41696

    DOI

    http://dx.doi.org/10.1038/srep41696

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1083685758

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/28164997


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    29 schema:description Elite parental lines are of great significance to crop breeding. To discover unique genomic loci associated with excellent economic traits in the elite cabbage inbred-line '01-20', we performed comparisons of phenotypes as well as whole-genome insertion-deletion/simple sequence repeat loci between '01-20' and each of its five sister lines. '01-20' has a range of excellent agronomic traits, including early-maturing, and improvements in plant type and leaf colour. Eight unique loci were discovered for '01-20' and '01-07-258', another elite line similar to '01-20' at the whole-genome level. In addition, two excellent double-haploid lines derived from a cross of '01-20' also inherited these loci. Based on the quantitative trait locus association results, five of these loci were found to be associated with important agronomic traits, which could explain why the elite parent '01-20' possesses greener outer leaves, a more compact and upright plant-type, rounder head, shorter core length, and better taste. Additionally, some of these loci have clustering effects for quantitative trait loci associated with different traits; therefore, important genes in these regions were analysed. The obtained results should enable marker-assisted multi-trait selection at the whole-genome level in cabbage breeding and provide insights into significant genome loci and their breeding effects.
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