Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-12

AUTHORS

Yongchao Dou, Diana J Cha, Jeffrey L Franklin, James N Higginbotham, Dennis K Jeppesen, Alissa M Weaver, Nripesh Prasad, Shawn Levy, Robert J Coffey, James G Patton, Bing Zhang

ABSTRACT

Recent studies have shown that circular RNAs (circRNAs) are abundant, widely expressed in mammals, and can display cell-type specific expression. However, how production of circRNAs is regulated and their precise biological function remains largely unknown. To study how circRNAs might be regulated during colorectal cancer progression, we used three isogenic colon cancer cell lines that differ only in KRAS mutation status. Cellular RNAs from the parental DLD-1 cells that contain both wild-type and G13D mutant KRAS alleles and isogenically-matched derivative cell lines, DKO-1 (mutant KRAS allele only) and DKs-8 (wild-type KRAS allele only) were analyzed using RNA-Seq. We developed a bioinformatics pipeline to identify and evaluate circRNA candidates from RNA-Seq data. Hundreds of high-quality circRNA candidates were identified in each cell line. Remarkably, circRNAs were significantly down-regulated at a global level in DLD-1 and DKO-1 cells compared to DKs-8 cells, indicating a widespread effect of mutant KRAS on circRNA abundance. This finding was confirmed in two independent colon cancer cell lines HCT116 (KRAS mutant) and HKe3 (KRAS WT). In all three cell lines, circRNAs were also found in secreted extracellular-vesicles, and circRNAs were more abundant in exosomes than cells. Our results suggest that circRNAs may serve as promising cancer biomarkers. More... »

PAGES

37982

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/srep37982

DOI

http://dx.doi.org/10.1038/srep37982

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1031022444

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27892494


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