The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-05

AUTHORS

Guo-Qiang Zhang, Qing Xu, Chao Bian, Wen-Chieh Tsai, Chuan-Ming Yeh, Ke-Wei Liu, Kouki Yoshida, Liang-Sheng Zhang, Song-Bin Chang, Fei Chen, Yu Shi, Yong-Yu Su, Yong-Qiang Zhang, Li-Jun Chen, Yayi Yin, Min Lin, Huixia Huang, Hua Deng, Zhi-Wen Wang, Shi-Lin Zhu, Xiang Zhao, Cao Deng, Shan-Ce Niu, Jie Huang, Meina Wang, Guo-Hui Liu, Hai-Jun Yang, Xin-Ju Xiao, Yu-Yun Hsiao, Wan-Lin Wu, You-Yi Chen, Nobutaka Mitsuda, Masaru Ohme-Takagi, Yi-Bo Luo, Yves Van de Peer, Zhong-Jian Liu

ABSTRACT

Orchids make up about 10% of all seed plant species, have great economical value, and are of specific scientific interest because of their renowned flowers and ecological adaptations. Here, we report the first draft genome sequence of a lithophytic orchid, Dendrobium catenatum. We predict 28,910 protein-coding genes, and find evidence of a whole genome duplication shared with Phalaenopsis. We observed the expansion of many resistance-related genes, suggesting a powerful immune system responsible for adaptation to a wide range of ecological niches. We also discovered extensive duplication of genes involved in glucomannan synthase activities, likely related to the synthesis of medicinal polysaccharides. Expansion of MADS-box gene clades ANR1, StMADS11, and MIKC(*), involved in the regulation of development and growth, suggests that these expansions are associated with the astonishing diversity of plant architecture in the genus Dendrobium. On the contrary, members of the type I MADS box gene family are missing, which might explain the loss of the endospermous seed. The findings reported here will be important for future studies into polysaccharide synthesis, adaptations to diverse environments and flower architecture of Orchidaceae. More... »

PAGES

19029

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/srep19029

    DOI

    http://dx.doi.org/10.1038/srep19029

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1039647685

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26754549


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