Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-10-28

AUTHORS

Shalabh Dixit, Akshaya Kumar Biswal, Aye Min, Amelia Henry, Rowena H. Oane, Manish L. Raorane, Toshisangba Longkumer, Isaiah M. Pabuayon, Sumanth K. Mutte, Adithi R. Vardarajan, Berta Miro, Ganesan Govindan, Blesilda Albano-Enriquez, Mandy Pueffeld, Nese Sreenivasulu, Inez Slamet-Loedin, Kalaipandian Sundarvelpandian, Yuan-Ching Tsai, Saurabh Raghuvanshi, Yue-Ie C. Hsing, Arvind Kumar, Ajay Kohli

ABSTRACT

Sub-QTLs and multiple intra-QTL genes are hypothesized to underpin large-effect QTLs. Known QTLs over gene families, biosynthetic pathways or certain traits represent functional gene-clusters of genes of the same gene ontology (GO). Gene-clusters containing genes of different GO have not been elaborated, except in silico as coexpressed genes within QTLs. Here we demonstrate the requirement of multiple intra-QTL genes for the full impact of QTL qDTY12.1 on rice yield under drought. Multiple evidences are presented for the need of the transcription factor ‘no apical meristem’ (OsNAM12.1) and its co-localized target genes of separate GO categories for qDTY12.1 function, raising a regulon-like model of genetic architecture. The molecular underpinnings of qDTY12.1 support its effectiveness in further improving a drought tolerant genotype and for its validity in multiple genotypes/ecosystems/environments. Resolving the combinatorial value of OsNAM12.1 with individual intra-QTL genes notwithstanding, identification and analyses of qDTY12.1has fast-tracked rice improvement towards food security. More... »

PAGES

15183

References to SciGraph publications

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/srep15183

    DOI

    http://dx.doi.org/10.1038/srep15183

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1007888834

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26507552


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