Revisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-12

AUTHORS

Ankita Chatterjee, Sudip Kundu

ABSTRACT

Chlorophyll is one of the most important pigments present in green plants and rice is one of the major food crops consumed worldwide. We curated the existing genome scale metabolic model (GSM) of rice leaf by incorporating new compartment, reactions and transporters. We used this modified GSM to elucidate how the chlorophyll is synthesized in a leaf through a series of bio-chemical reactions spanned over different organelles using inorganic macronutrients and light energy. We predicted the essential reactions and the associated genes of chlorophyll synthesis and validated against the existing experimental evidences. Further, ammonia is known to be the preferred source of nitrogen in rice paddy fields. The ammonia entering into the plant is assimilated in the root and leaf. The focus of the present work is centered on rice leaf metabolism. We studied the relative importance of ammonia transporters through the chloroplast and the cytosol and their interlink with other intracellular transporters. Ammonia assimilation in the leaves takes place by the enzyme glutamine synthetase (GS) which is present in the cytosol (GS1) and chloroplast (GS2). Our results provided possible explanation why GS2 mutants show normal growth under minimum photorespiration and appear chlorotic when exposed to air. More... »

PAGES

14975

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/srep14975

DOI

http://dx.doi.org/10.1038/srep14975

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1018238200

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/26443104


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