The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-05

AUTHORS

Xi-Hui Xu, Zhen-Zhu Su, Chen Wang, Christian P. Kubicek, Xiao-Xiao Feng, Li-Juan Mao, Jia-Ying Wang, Chen Chen, Fu-Cheng Lin, Chu-Long Zhang

ABSTRACT

The fungus Harpophora oryzae is a close relative of the pathogen Magnaporthe oryzae and a beneficial endosymbiont of wild rice. Here, we show that H. oryzae evolved from a pathogenic ancestor. The overall genomic structures of H. and M. oryzae were found to be similar. However, during interactions with rice, the expression of 11.7% of all genes showed opposing trends in the two fungi, suggesting differences in gene regulation. Moreover, infection patterns, triggering of host defense responses, signal transduction and nutritional preferences exhibited remarkable differentiation between the two fungi. In addition, the H. oryzae genome was found to contain thousands of loci of transposon-like elements, which led to the disruption of 929 genes. Our results indicate that the gain or loss of orphan genes, DNA duplications, gene family expansions and the frequent translocation of transposon-like elements have been important factors in the evolution of this endosymbiont from a pathogenic ancestor. More... »

PAGES

5783

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/srep05783

DOI

http://dx.doi.org/10.1038/srep05783

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1024379946

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/25048173


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ascomycota", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA Transposable Elements", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Endophytes", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Evolution, Molecular", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Loci", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Fungal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Oryza", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Diseases", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis, DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Symbiosis", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Xu", 
        "givenName": "Xi-Hui", 
        "id": "sg:person.0764055010.94", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764055010.94"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Su", 
        "givenName": "Zhen-Zhu", 
        "id": "sg:person.01317117457.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01317117457.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Chen", 
        "id": "sg:person.01100303410.80", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100303410.80"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "TU Wien", 
          "id": "https://www.grid.ac/institutes/grid.5329.d", 
          "name": [
            "Austrian Center of Industrial Biotechnology (ACIB), c/o Vienna University of Technology, 1060 Vienna, Austria"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kubicek", 
        "givenName": "Christian P.", 
        "id": "sg:person.0755263767.29", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0755263767.29"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Feng", 
        "givenName": "Xiao-Xiao", 
        "id": "sg:person.0707741757.32", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707741757.32"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mao", 
        "givenName": "Li-Juan", 
        "id": "sg:person.01365232657.32", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01365232657.32"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Jia-Ying", 
        "id": "sg:person.01017066735.60", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01017066735.60"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Nanjing Agricultural University", 
          "id": "https://www.grid.ac/institutes/grid.27871.3b", 
          "name": [
            "College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chen", 
        "givenName": "Chen", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lin", 
        "givenName": "Fu-Cheng", 
        "id": "sg:person.0653467510.85", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653467510.85"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Zhejiang University", 
          "id": "https://www.grid.ac/institutes/grid.13402.34", 
          "name": [
            "State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhang", 
        "givenName": "Chu-Long", 
        "id": "sg:person.0647273515.06", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0647273515.06"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1111/j.1574-6968.2010.01963.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000242196"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1574-6968.2010.01963.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000242196"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/mcb.00395-12", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000599991"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/30.7.1575", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001067672"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.111.176347", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003217980"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.1017351108", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004253849"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.2109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007540814", 
          "https://doi.org/10.1038/nmeth.2109"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm404", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007683223"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3852/09-016", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009146530"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2005-6-3-r24", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010291056", 
          "https://doi.org/10.1186/gb-2005-6-3-r24"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-478", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010917863", 
          "https://doi.org/10.1186/1471-2105-9-478"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-478", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010917863", 
          "https://doi.org/10.1186/1471-2105-9-478"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.111.092957", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011552820"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.ppat.1001302", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011941709"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btp120", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012425816"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1071/bt9750193", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013053886"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3852/12-359", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013255027"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.mib.2012.09.004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014553930"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature06499", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014953670", 
          "https://doi.org/10.1038/nature06499"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm071", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014996474"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.110.078048", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016254347"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btp336", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016441007"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03449", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018289612", 
          "https://doi.org/10.1038/nature03449"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03449", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018289612", 
          "https://doi.org/10.1038/nature03449"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev-phyto-080508-081831", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019995732"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2011-12-5-r45", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020462447", 
          "https://doi.org/10.1186/gb-2011-12-5-r45"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1068275", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020691036"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03959", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021574562", 
          "https://doi.org/10.1038/nature03959"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03959", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021574562", 
          "https://doi.org/10.1038/nature03959"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.125.3.1198", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024328567"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0002300", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024516610"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.phyto.45.062806.094346", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025829987"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-1-4020-2686-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026641616", 
          "https://doi.org/10.1007/978-1-4020-2686-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-1-4020-2686-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026641616", 
          "https://doi.org/10.1007/978-1-4020-2686-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fgb.2008.05.003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027708884"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.micro.57.030502.090957", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028232352"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.5.11.1575", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029834777"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3852/11-022", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030231628"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3852/mycologia.98.6.838", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030370234"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt.1621", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031035095", 
          "https://doi.org/10.1038/nbt.1621"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tim.2009.01.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031109693"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-14-274", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031401646", 
          "https://doi.org/10.1186/1471-2164-14-274"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.py.29.090191.002303", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034280162"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1469-8137.2002.00352.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034371501"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026334", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037148423"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0061332", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039366813"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature05286", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039464463", 
          "https://doi.org/10.1038/nature05286"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature05286", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039464463", 
          "https://doi.org/10.1038/nature05286"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature05286", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039464463", 
          "https://doi.org/10.1038/nature05286"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1574-6968.2011.02465.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039504732"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.8.6.985", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039840400"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btr088", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041309983"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.12.2.237", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041339040"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.ppat.1002450", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042146064"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btn013", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042604359"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-2745.2008.01388.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042763215"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-2958.2008.06270.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043453762"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl097", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043897359"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl446", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046470836"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.ppat.1002290", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047003665"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/sysbio/sys029", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049138722"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.109.066340", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049567855"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btq683", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051356507"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-2745.2008.01362.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052884821"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jf400428t", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055912539"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/503444", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058783800"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1094/mpmi-06-11-0179", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060077690"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1094/mpmi-20-5-0475", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060078594"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1094/phyto-01-10-0011", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060098824"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/ijs.0.031864-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060384360"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/2666186", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070051135"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3869740", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070467716"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3870210", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070468131"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3870925", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070468759"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.4161/auto.21274", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1072289578"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.4161/auto.5.7.9161", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1072290422"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074530515", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/15572536.2006.11832614", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1084167734"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2015-05", 
    "datePublishedReg": "2015-05-01", 
    "description": "The fungus Harpophora oryzae is a close relative of the pathogen Magnaporthe oryzae and a beneficial endosymbiont of wild rice. Here, we show that H. oryzae evolved from a pathogenic ancestor. The overall genomic structures of H. and M. oryzae were found to be similar. However, during interactions with rice, the expression of 11.7% of all genes showed opposing trends in the two fungi, suggesting differences in gene regulation. Moreover, infection patterns, triggering of host defense responses, signal transduction and nutritional preferences exhibited remarkable differentiation between the two fungi. In addition, the H. oryzae genome was found to contain thousands of loci of transposon-like elements, which led to the disruption of 929 genes. Our results indicate that the gain or loss of orphan genes, DNA duplications, gene family expansions and the frequent translocation of transposon-like elements have been important factors in the evolution of this endosymbiont from a pathogenic ancestor. ", 
    "genre": "research_article", 
    "id": "sg:pub.10.1038/srep05783", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.4967433", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.5075019", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1045337", 
        "issn": [
          "2045-2322"
        ], 
        "name": "Scientific Reports", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "4"
      }
    ], 
    "name": "The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte", 
    "pagination": "5783", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "7426091f773be5d2ea143f9880d16851b69cc5ea3472e85b4c2ae5cc3e9b867c"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "25048173"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101563288"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/srep05783"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1024379946"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/srep05783", 
      "https://app.dimensions.ai/details/publication/pub.1024379946"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T22:19", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000424.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://www.nature.com/srep/2014/140722/srep05783/full/srep05783.html"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/srep05783'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/srep05783'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/srep05783'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/srep05783'


 

This table displays all metadata directly associated to this object as RDF triples.

403 TRIPLES      21 PREDICATES      110 URIs      31 LITERALS      19 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/srep05783 schema:about N04bc4caeabf0475ba69f5376bad7ba95
2 N11933f644ba648be81fab38b66f615b3
3 N3ab783542eb2447cbf0bb8626888927c
4 N64f585e742784437aaedc2b66108358b
5 N8cefbf163e1e4770acaab5fd5b38fd83
6 N9167490531fd4a3096fbb3295ca89627
7 Nc6433cae13634b399fce4051f345660f
8 Ne0ed35ea418246b29315551607933628
9 Ne68a02375cae4845a6219cf0ada063e4
10 Ne982e46c64204396ad4773d86d0f19b0
11 anzsrc-for:06
12 anzsrc-for:0604
13 schema:author N53f401317e8f4099b867e29197b49588
14 schema:citation sg:pub.10.1007/978-1-4020-2686-7
15 sg:pub.10.1038/nature03449
16 sg:pub.10.1038/nature03959
17 sg:pub.10.1038/nature05286
18 sg:pub.10.1038/nature06499
19 sg:pub.10.1038/nbt.1621
20 sg:pub.10.1038/nmeth.2109
21 sg:pub.10.1186/1471-2105-9-478
22 sg:pub.10.1186/1471-2164-14-274
23 sg:pub.10.1186/gb-2005-6-3-r24
24 sg:pub.10.1186/gb-2011-12-5-r45
25 https://app.dimensions.ai/details/publication/pub.1074530515
26 https://doi.org/10.1016/j.fgb.2008.05.003
27 https://doi.org/10.1016/j.mib.2012.09.004
28 https://doi.org/10.1016/j.tim.2009.01.002
29 https://doi.org/10.1021/jf400428t
30 https://doi.org/10.1046/j.1469-8137.2002.00352.x
31 https://doi.org/10.1071/bt9750193
32 https://doi.org/10.1073/pnas.1017351108
33 https://doi.org/10.1080/15572536.2006.11832614
34 https://doi.org/10.1086/503444
35 https://doi.org/10.1093/bioinformatics/btl097
36 https://doi.org/10.1093/bioinformatics/btl446
37 https://doi.org/10.1093/bioinformatics/btm071
38 https://doi.org/10.1093/bioinformatics/btm404
39 https://doi.org/10.1093/bioinformatics/btn013
40 https://doi.org/10.1093/bioinformatics/btp120
41 https://doi.org/10.1093/bioinformatics/btp336
42 https://doi.org/10.1093/bioinformatics/btq683
43 https://doi.org/10.1093/bioinformatics/btr088
44 https://doi.org/10.1093/nar/30.7.1575
45 https://doi.org/10.1093/oxfordjournals.molbev.a026334
46 https://doi.org/10.1093/sysbio/sys029
47 https://doi.org/10.1094/mpmi-06-11-0179
48 https://doi.org/10.1094/mpmi-20-5-0475
49 https://doi.org/10.1094/phyto-01-10-0011
50 https://doi.org/10.1099/ijs.0.031864-0
51 https://doi.org/10.1104/pp.111.176347
52 https://doi.org/10.1104/pp.125.3.1198
53 https://doi.org/10.1105/tpc.109.066340
54 https://doi.org/10.1105/tpc.110.078048
55 https://doi.org/10.1105/tpc.111.092957
56 https://doi.org/10.1105/tpc.12.2.237
57 https://doi.org/10.1105/tpc.5.11.1575
58 https://doi.org/10.1105/tpc.8.6.985
59 https://doi.org/10.1111/j.1365-2745.2008.01362.x
60 https://doi.org/10.1111/j.1365-2745.2008.01388.x
61 https://doi.org/10.1111/j.1365-2958.2008.06270.x
62 https://doi.org/10.1111/j.1574-6968.2010.01963.x
63 https://doi.org/10.1111/j.1574-6968.2011.02465.x
64 https://doi.org/10.1126/science.1068275
65 https://doi.org/10.1128/mcb.00395-12
66 https://doi.org/10.1146/annurev-phyto-080508-081831
67 https://doi.org/10.1146/annurev.micro.57.030502.090957
68 https://doi.org/10.1146/annurev.phyto.45.062806.094346
69 https://doi.org/10.1146/annurev.py.29.090191.002303
70 https://doi.org/10.1371/journal.pone.0002300
71 https://doi.org/10.1371/journal.pone.0061332
72 https://doi.org/10.1371/journal.ppat.1001302
73 https://doi.org/10.1371/journal.ppat.1002290
74 https://doi.org/10.1371/journal.ppat.1002450
75 https://doi.org/10.2307/2666186
76 https://doi.org/10.2307/3869740
77 https://doi.org/10.2307/3870210
78 https://doi.org/10.2307/3870925
79 https://doi.org/10.3852/09-016
80 https://doi.org/10.3852/11-022
81 https://doi.org/10.3852/12-359
82 https://doi.org/10.3852/mycologia.98.6.838
83 https://doi.org/10.4161/auto.21274
84 https://doi.org/10.4161/auto.5.7.9161
85 schema:datePublished 2015-05
86 schema:datePublishedReg 2015-05-01
87 schema:description The fungus Harpophora oryzae is a close relative of the pathogen Magnaporthe oryzae and a beneficial endosymbiont of wild rice. Here, we show that H. oryzae evolved from a pathogenic ancestor. The overall genomic structures of H. and M. oryzae were found to be similar. However, during interactions with rice, the expression of 11.7% of all genes showed opposing trends in the two fungi, suggesting differences in gene regulation. Moreover, infection patterns, triggering of host defense responses, signal transduction and nutritional preferences exhibited remarkable differentiation between the two fungi. In addition, the H. oryzae genome was found to contain thousands of loci of transposon-like elements, which led to the disruption of 929 genes. Our results indicate that the gain or loss of orphan genes, DNA duplications, gene family expansions and the frequent translocation of transposon-like elements have been important factors in the evolution of this endosymbiont from a pathogenic ancestor.
88 schema:genre research_article
89 schema:inLanguage en
90 schema:isAccessibleForFree true
91 schema:isPartOf N345f7c8237724cbf9401de4bcb5478af
92 N8bccf75691d742188a948ec01503a8be
93 sg:journal.1045337
94 schema:name The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte
95 schema:pagination 5783
96 schema:productId N475e7079e2de4389bd57790a6adf1321
97 N80d0e898e7b543fe8d42bda5d8b1b03f
98 N92f20253bb5b4896a510862f40d478a9
99 Nbb3a3bed9b0d47d0b3dfc6e636ff25ea
100 Nc1dc0e7cd08b44e08a0e1c51e1ad766d
101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024379946
102 https://doi.org/10.1038/srep05783
103 schema:sdDatePublished 2019-04-10T22:19
104 schema:sdLicense https://scigraph.springernature.com/explorer/license/
105 schema:sdPublisher Ncf513c8913bd4f6eb7ef48c9ffc49c8d
106 schema:url http://www.nature.com/srep/2014/140722/srep05783/full/srep05783.html
107 sgo:license sg:explorer/license/
108 sgo:sdDataset articles
109 rdf:type schema:ScholarlyArticle
110 N04bc4caeabf0475ba69f5376bad7ba95 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
111 schema:name Genetic Loci
112 rdf:type schema:DefinedTerm
113 N0f209eb432fa4d71b5f7efb966a25798 rdf:first sg:person.01317117457.04
114 rdf:rest Na7d97d5ec22b4e6a9b7ceda8db90bbd4
115 N11933f644ba648be81fab38b66f615b3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
116 schema:name Symbiosis
117 rdf:type schema:DefinedTerm
118 N2ada80dd7cdd43d9a4ae7763c529f719 rdf:first sg:person.0653467510.85
119 rdf:rest Nfb9b7cbd77eb4084832956395eff590b
120 N345f7c8237724cbf9401de4bcb5478af schema:volumeNumber 4
121 rdf:type schema:PublicationVolume
122 N3ab783542eb2447cbf0bb8626888927c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
123 schema:name Plant Diseases
124 rdf:type schema:DefinedTerm
125 N475e7079e2de4389bd57790a6adf1321 schema:name nlm_unique_id
126 schema:value 101563288
127 rdf:type schema:PropertyValue
128 N53f401317e8f4099b867e29197b49588 rdf:first sg:person.0764055010.94
129 rdf:rest N0f209eb432fa4d71b5f7efb966a25798
130 N64f585e742784437aaedc2b66108358b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
131 schema:name Endophytes
132 rdf:type schema:DefinedTerm
133 N68363b5ce8d842f5a3424844e5ff48e5 rdf:first sg:person.0707741757.32
134 rdf:rest Nd92cd333a3cc4b6d80f7238548878f65
135 N6859c97bb25e48c5a646973f1a2c004b rdf:first sg:person.0755263767.29
136 rdf:rest N68363b5ce8d842f5a3424844e5ff48e5
137 N6a24cd56476a440db0b6e2e1e50c7275 schema:affiliation https://www.grid.ac/institutes/grid.27871.3b
138 schema:familyName Chen
139 schema:givenName Chen
140 rdf:type schema:Person
141 N80d0e898e7b543fe8d42bda5d8b1b03f schema:name dimensions_id
142 schema:value pub.1024379946
143 rdf:type schema:PropertyValue
144 N8bccf75691d742188a948ec01503a8be schema:issueNumber 1
145 rdf:type schema:PublicationIssue
146 N8cefbf163e1e4770acaab5fd5b38fd83 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
147 schema:name DNA Transposable Elements
148 rdf:type schema:DefinedTerm
149 N9167490531fd4a3096fbb3295ca89627 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
150 schema:name Sequence Analysis, DNA
151 rdf:type schema:DefinedTerm
152 N92f20253bb5b4896a510862f40d478a9 schema:name pubmed_id
153 schema:value 25048173
154 rdf:type schema:PropertyValue
155 Na7d97d5ec22b4e6a9b7ceda8db90bbd4 rdf:first sg:person.01100303410.80
156 rdf:rest N6859c97bb25e48c5a646973f1a2c004b
157 Nbb3a3bed9b0d47d0b3dfc6e636ff25ea schema:name doi
158 schema:value 10.1038/srep05783
159 rdf:type schema:PropertyValue
160 Nbb4a28a610f145f0b9d66dc7a158b641 rdf:first N6a24cd56476a440db0b6e2e1e50c7275
161 rdf:rest N2ada80dd7cdd43d9a4ae7763c529f719
162 Nc1dc0e7cd08b44e08a0e1c51e1ad766d schema:name readcube_id
163 schema:value 7426091f773be5d2ea143f9880d16851b69cc5ea3472e85b4c2ae5cc3e9b867c
164 rdf:type schema:PropertyValue
165 Nc6433cae13634b399fce4051f345660f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
166 schema:name Ascomycota
167 rdf:type schema:DefinedTerm
168 Ncf513c8913bd4f6eb7ef48c9ffc49c8d schema:name Springer Nature - SN SciGraph project
169 rdf:type schema:Organization
170 Nd92cd333a3cc4b6d80f7238548878f65 rdf:first sg:person.01365232657.32
171 rdf:rest Nf44bb10a46cb47c4b14fd580ebf0b3e4
172 Ne0ed35ea418246b29315551607933628 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
173 schema:name Evolution, Molecular
174 rdf:type schema:DefinedTerm
175 Ne68a02375cae4845a6219cf0ada063e4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
176 schema:name Oryza
177 rdf:type schema:DefinedTerm
178 Ne982e46c64204396ad4773d86d0f19b0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
179 schema:name Genome, Fungal
180 rdf:type schema:DefinedTerm
181 Nf44bb10a46cb47c4b14fd580ebf0b3e4 rdf:first sg:person.01017066735.60
182 rdf:rest Nbb4a28a610f145f0b9d66dc7a158b641
183 Nfb9b7cbd77eb4084832956395eff590b rdf:first sg:person.0647273515.06
184 rdf:rest rdf:nil
185 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
186 schema:name Biological Sciences
187 rdf:type schema:DefinedTerm
188 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
189 schema:name Genetics
190 rdf:type schema:DefinedTerm
191 sg:grant.4967433 http://pending.schema.org/fundedItem sg:pub.10.1038/srep05783
192 rdf:type schema:MonetaryGrant
193 sg:grant.5075019 http://pending.schema.org/fundedItem sg:pub.10.1038/srep05783
194 rdf:type schema:MonetaryGrant
195 sg:journal.1045337 schema:issn 2045-2322
196 schema:name Scientific Reports
197 rdf:type schema:Periodical
198 sg:person.01017066735.60 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
199 schema:familyName Wang
200 schema:givenName Jia-Ying
201 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01017066735.60
202 rdf:type schema:Person
203 sg:person.01100303410.80 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
204 schema:familyName Wang
205 schema:givenName Chen
206 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100303410.80
207 rdf:type schema:Person
208 sg:person.01317117457.04 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
209 schema:familyName Su
210 schema:givenName Zhen-Zhu
211 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01317117457.04
212 rdf:type schema:Person
213 sg:person.01365232657.32 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
214 schema:familyName Mao
215 schema:givenName Li-Juan
216 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01365232657.32
217 rdf:type schema:Person
218 sg:person.0647273515.06 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
219 schema:familyName Zhang
220 schema:givenName Chu-Long
221 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0647273515.06
222 rdf:type schema:Person
223 sg:person.0653467510.85 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
224 schema:familyName Lin
225 schema:givenName Fu-Cheng
226 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653467510.85
227 rdf:type schema:Person
228 sg:person.0707741757.32 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
229 schema:familyName Feng
230 schema:givenName Xiao-Xiao
231 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707741757.32
232 rdf:type schema:Person
233 sg:person.0755263767.29 schema:affiliation https://www.grid.ac/institutes/grid.5329.d
234 schema:familyName Kubicek
235 schema:givenName Christian P.
236 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0755263767.29
237 rdf:type schema:Person
238 sg:person.0764055010.94 schema:affiliation https://www.grid.ac/institutes/grid.13402.34
239 schema:familyName Xu
240 schema:givenName Xi-Hui
241 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764055010.94
242 rdf:type schema:Person
243 sg:pub.10.1007/978-1-4020-2686-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026641616
244 https://doi.org/10.1007/978-1-4020-2686-7
245 rdf:type schema:CreativeWork
246 sg:pub.10.1038/nature03449 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018289612
247 https://doi.org/10.1038/nature03449
248 rdf:type schema:CreativeWork
249 sg:pub.10.1038/nature03959 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021574562
250 https://doi.org/10.1038/nature03959
251 rdf:type schema:CreativeWork
252 sg:pub.10.1038/nature05286 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039464463
253 https://doi.org/10.1038/nature05286
254 rdf:type schema:CreativeWork
255 sg:pub.10.1038/nature06499 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014953670
256 https://doi.org/10.1038/nature06499
257 rdf:type schema:CreativeWork
258 sg:pub.10.1038/nbt.1621 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031035095
259 https://doi.org/10.1038/nbt.1621
260 rdf:type schema:CreativeWork
261 sg:pub.10.1038/nmeth.2109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007540814
262 https://doi.org/10.1038/nmeth.2109
263 rdf:type schema:CreativeWork
264 sg:pub.10.1186/1471-2105-9-478 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010917863
265 https://doi.org/10.1186/1471-2105-9-478
266 rdf:type schema:CreativeWork
267 sg:pub.10.1186/1471-2164-14-274 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031401646
268 https://doi.org/10.1186/1471-2164-14-274
269 rdf:type schema:CreativeWork
270 sg:pub.10.1186/gb-2005-6-3-r24 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010291056
271 https://doi.org/10.1186/gb-2005-6-3-r24
272 rdf:type schema:CreativeWork
273 sg:pub.10.1186/gb-2011-12-5-r45 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020462447
274 https://doi.org/10.1186/gb-2011-12-5-r45
275 rdf:type schema:CreativeWork
276 https://app.dimensions.ai/details/publication/pub.1074530515 schema:CreativeWork
277 https://doi.org/10.1016/j.fgb.2008.05.003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027708884
278 rdf:type schema:CreativeWork
279 https://doi.org/10.1016/j.mib.2012.09.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014553930
280 rdf:type schema:CreativeWork
281 https://doi.org/10.1016/j.tim.2009.01.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031109693
282 rdf:type schema:CreativeWork
283 https://doi.org/10.1021/jf400428t schema:sameAs https://app.dimensions.ai/details/publication/pub.1055912539
284 rdf:type schema:CreativeWork
285 https://doi.org/10.1046/j.1469-8137.2002.00352.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1034371501
286 rdf:type schema:CreativeWork
287 https://doi.org/10.1071/bt9750193 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013053886
288 rdf:type schema:CreativeWork
289 https://doi.org/10.1073/pnas.1017351108 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004253849
290 rdf:type schema:CreativeWork
291 https://doi.org/10.1080/15572536.2006.11832614 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084167734
292 rdf:type schema:CreativeWork
293 https://doi.org/10.1086/503444 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058783800
294 rdf:type schema:CreativeWork
295 https://doi.org/10.1093/bioinformatics/btl097 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043897359
296 rdf:type schema:CreativeWork
297 https://doi.org/10.1093/bioinformatics/btl446 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046470836
298 rdf:type schema:CreativeWork
299 https://doi.org/10.1093/bioinformatics/btm071 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014996474
300 rdf:type schema:CreativeWork
301 https://doi.org/10.1093/bioinformatics/btm404 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007683223
302 rdf:type schema:CreativeWork
303 https://doi.org/10.1093/bioinformatics/btn013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042604359
304 rdf:type schema:CreativeWork
305 https://doi.org/10.1093/bioinformatics/btp120 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012425816
306 rdf:type schema:CreativeWork
307 https://doi.org/10.1093/bioinformatics/btp336 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016441007
308 rdf:type schema:CreativeWork
309 https://doi.org/10.1093/bioinformatics/btq683 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051356507
310 rdf:type schema:CreativeWork
311 https://doi.org/10.1093/bioinformatics/btr088 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041309983
312 rdf:type schema:CreativeWork
313 https://doi.org/10.1093/nar/30.7.1575 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001067672
314 rdf:type schema:CreativeWork
315 https://doi.org/10.1093/oxfordjournals.molbev.a026334 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037148423
316 rdf:type schema:CreativeWork
317 https://doi.org/10.1093/sysbio/sys029 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049138722
318 rdf:type schema:CreativeWork
319 https://doi.org/10.1094/mpmi-06-11-0179 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060077690
320 rdf:type schema:CreativeWork
321 https://doi.org/10.1094/mpmi-20-5-0475 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060078594
322 rdf:type schema:CreativeWork
323 https://doi.org/10.1094/phyto-01-10-0011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060098824
324 rdf:type schema:CreativeWork
325 https://doi.org/10.1099/ijs.0.031864-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060384360
326 rdf:type schema:CreativeWork
327 https://doi.org/10.1104/pp.111.176347 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003217980
328 rdf:type schema:CreativeWork
329 https://doi.org/10.1104/pp.125.3.1198 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024328567
330 rdf:type schema:CreativeWork
331 https://doi.org/10.1105/tpc.109.066340 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049567855
332 rdf:type schema:CreativeWork
333 https://doi.org/10.1105/tpc.110.078048 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016254347
334 rdf:type schema:CreativeWork
335 https://doi.org/10.1105/tpc.111.092957 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011552820
336 rdf:type schema:CreativeWork
337 https://doi.org/10.1105/tpc.12.2.237 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041339040
338 rdf:type schema:CreativeWork
339 https://doi.org/10.1105/tpc.5.11.1575 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029834777
340 rdf:type schema:CreativeWork
341 https://doi.org/10.1105/tpc.8.6.985 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039840400
342 rdf:type schema:CreativeWork
343 https://doi.org/10.1111/j.1365-2745.2008.01362.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1052884821
344 rdf:type schema:CreativeWork
345 https://doi.org/10.1111/j.1365-2745.2008.01388.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1042763215
346 rdf:type schema:CreativeWork
347 https://doi.org/10.1111/j.1365-2958.2008.06270.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1043453762
348 rdf:type schema:CreativeWork
349 https://doi.org/10.1111/j.1574-6968.2010.01963.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1000242196
350 rdf:type schema:CreativeWork
351 https://doi.org/10.1111/j.1574-6968.2011.02465.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1039504732
352 rdf:type schema:CreativeWork
353 https://doi.org/10.1126/science.1068275 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020691036
354 rdf:type schema:CreativeWork
355 https://doi.org/10.1128/mcb.00395-12 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000599991
356 rdf:type schema:CreativeWork
357 https://doi.org/10.1146/annurev-phyto-080508-081831 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019995732
358 rdf:type schema:CreativeWork
359 https://doi.org/10.1146/annurev.micro.57.030502.090957 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028232352
360 rdf:type schema:CreativeWork
361 https://doi.org/10.1146/annurev.phyto.45.062806.094346 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025829987
362 rdf:type schema:CreativeWork
363 https://doi.org/10.1146/annurev.py.29.090191.002303 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034280162
364 rdf:type schema:CreativeWork
365 https://doi.org/10.1371/journal.pone.0002300 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024516610
366 rdf:type schema:CreativeWork
367 https://doi.org/10.1371/journal.pone.0061332 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039366813
368 rdf:type schema:CreativeWork
369 https://doi.org/10.1371/journal.ppat.1001302 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011941709
370 rdf:type schema:CreativeWork
371 https://doi.org/10.1371/journal.ppat.1002290 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047003665
372 rdf:type schema:CreativeWork
373 https://doi.org/10.1371/journal.ppat.1002450 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042146064
374 rdf:type schema:CreativeWork
375 https://doi.org/10.2307/2666186 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070051135
376 rdf:type schema:CreativeWork
377 https://doi.org/10.2307/3869740 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070467716
378 rdf:type schema:CreativeWork
379 https://doi.org/10.2307/3870210 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070468131
380 rdf:type schema:CreativeWork
381 https://doi.org/10.2307/3870925 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070468759
382 rdf:type schema:CreativeWork
383 https://doi.org/10.3852/09-016 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009146530
384 rdf:type schema:CreativeWork
385 https://doi.org/10.3852/11-022 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030231628
386 rdf:type schema:CreativeWork
387 https://doi.org/10.3852/12-359 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013255027
388 rdf:type schema:CreativeWork
389 https://doi.org/10.3852/mycologia.98.6.838 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030370234
390 rdf:type schema:CreativeWork
391 https://doi.org/10.4161/auto.21274 schema:sameAs https://app.dimensions.ai/details/publication/pub.1072289578
392 rdf:type schema:CreativeWork
393 https://doi.org/10.4161/auto.5.7.9161 schema:sameAs https://app.dimensions.ai/details/publication/pub.1072290422
394 rdf:type schema:CreativeWork
395 https://www.grid.ac/institutes/grid.13402.34 schema:alternateName Zhejiang University
396 schema:name State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
397 rdf:type schema:Organization
398 https://www.grid.ac/institutes/grid.27871.3b schema:alternateName Nanjing Agricultural University
399 schema:name College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
400 rdf:type schema:Organization
401 https://www.grid.ac/institutes/grid.5329.d schema:alternateName TU Wien
402 schema:name Austrian Center of Industrial Biotechnology (ACIB), c/o Vienna University of Technology, 1060 Vienna, Austria
403 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...