Direct cancer tissue proteomics: a method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2006-06-26

AUTHORS

S-I Hwang, J Thumar, D H Lundgren, K Rezaul, V Mayya, L Wu, J Eng, M E Wright, D K Han

ABSTRACT

Successful treatment of multiple cancer types requires early detection and identification of reliable biomarkers present in specific cancer tissues. To test the feasibility of identifying proteins from archival cancer tissues, we have developed a methodology, termed direct tissue proteomics (DTP), which can be used to identify proteins directly from formalin-fixed paraffin-embedded prostate cancer tissue samples. Using minute prostate biopsy sections, we demonstrate the identification of 428 prostate-expressed proteins using the shotgun method. Because the DTP method is not quantitative, we employed the absolute quantification method and demonstrate picogram level quantification of prostate-specific antigen. In depth bioinformatics analysis of these expressed proteins affords the categorization of metabolic pathways that may be important for distinct stages of prostate carcinogenesis. Furthermore, we validate Wnt-3 as an upregulated protein in cancerous prostate cells by immunohistochemistry. We propose that this general strategy provides a roadmap for successful identification of critical molecular targets of multiple cancer types. More... »

PAGES

65-76

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/sj.onc.1209755

DOI

http://dx.doi.org/10.1038/sj.onc.1209755

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1000262143

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/16799640


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