Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-12-20

AUTHORS

Feng Cheng, Jian Wu, Chengcheng Cai, Lixia Fu, Jianli Liang, Theo Borm, Mu Zhuang, Yangyong Zhang, Fenglan Zhang, Guusje Bonnema, Xiaowu Wang

ABSTRACT

The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops. More... »

PAGES

160119

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/sdata.2016.119

DOI

http://dx.doi.org/10.1038/sdata.2016.119

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https://app.dimensions.ai/details/publication/pub.1025706152

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27996963


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