Ontology type: schema:ScholarlyArticle
2019-12
AUTHORSChina Lunde, Athen Kimberlin, Samuel Leiboff, Abraham J. Koo, Sarah Hake
ABSTRACTMaize is monecious, with separate male and female inflorescences. Maize flowers are initially bisexual but achieve separate sexual identities through organ arrest. Loss-of-function mutants in the jasmonic acid (JA) pathway have only female flowers due to failure to abort silks in the tassel. Tasselseed5 (Ts5) shares this phenotype but is dominant. Positional cloning and transcriptomics of tassels identified an ectopically expressed gene in the CYP94B subfamily, Ts5 (ZmCYP94B1). CYP94B enzymes are wound inducible and inactivate bioactive jasmonoyl-L-isoleucine (JA-Ile). Consistent with this result, tassels and wounded leaves of Ts5 mutants displayed lower JA and JA-lle precursors and higher 12OH-JA-lle product than the wild type. Furthermore, many wounding and jasmonate pathway genes were differentially expressed in Ts5 tassels. We propose that the Ts5 phenotype results from the interruption of JA signaling during sexual differentiation via the upregulation of ZmCYP94B1 and that its proper expression maintains maize monoecy. More... »
PAGES114
http://scigraph.springernature.com/pub.10.1038/s42003-019-0354-1
DOIhttp://dx.doi.org/10.1038/s42003-019-0354-1
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1112969889
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30937397
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Agricultural Research Service",
"id": "https://www.grid.ac/institutes/grid.463419.d",
"name": [
"University of California, 94720, Berkeley, CA, USA",
"Plant Gene Expression Center, U.S. Department of Agriculture-Agricultural Research Service, 800 Buchanan Street, 94710, Albany, CA, USA"
],
"type": "Organization"
},
"familyName": "Lunde",
"givenName": "China",
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Missouri",
"id": "https://www.grid.ac/institutes/grid.134936.a",
"name": [
"Department of Biochemistry, University of Missouri, 65211, Columbia, MO, USA",
"Interdisciplinary Plant Group, University of Missouri, 65211, Columbia, MO, USA"
],
"type": "Organization"
},
"familyName": "Kimberlin",
"givenName": "Athen",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Agricultural Research Service",
"id": "https://www.grid.ac/institutes/grid.463419.d",
"name": [
"University of California, 94720, Berkeley, CA, USA",
"Plant Gene Expression Center, U.S. Department of Agriculture-Agricultural Research Service, 800 Buchanan Street, 94710, Albany, CA, USA"
],
"type": "Organization"
},
"familyName": "Leiboff",
"givenName": "Samuel",
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Missouri",
"id": "https://www.grid.ac/institutes/grid.134936.a",
"name": [
"Department of Biochemistry, University of Missouri, 65211, Columbia, MO, USA",
"Interdisciplinary Plant Group, University of Missouri, 65211, Columbia, MO, USA"
],
"type": "Organization"
},
"familyName": "Koo",
"givenName": "Abraham J.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Agricultural Research Service",
"id": "https://www.grid.ac/institutes/grid.463419.d",
"name": [
"University of California, 94720, Berkeley, CA, USA",
"Plant Gene Expression Center, U.S. Department of Agriculture-Agricultural Research Service, 800 Buchanan Street, 94710, Albany, CA, USA"
],
"type": "Organization"
},
"familyName": "Hake",
"givenName": "Sarah",
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1104/pp.107.115691",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005136700"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.3317",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005140994",
"https://doi.org/10.1038/nmeth.3317"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/tpj.13415",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005485004"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbalip.2016.03.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007114616"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/dvg.22877",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009319297"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.6.5.751",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010743588"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/erv521",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010842704"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/tpj.12115",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010855324"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pcr110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011449329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m114.603084",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011665343"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1108359108",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013016578"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00343.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013777935"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1469-8137.2006.01726.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014027162"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1155/2011/923035",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015904681"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nchembio.161",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018275967",
"https://doi.org/10.1038/nchembio.161"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nchembio.161",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018275967",
"https://doi.org/10.1038/nchembio.161"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.phytochem.2015.06.027",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019743126"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.phytochem.2015.06.027",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019743126"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m111.316364",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020364802"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00438-015-1042-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021634787",
"https://doi.org/10.1007/s00438-015-1042-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00438-015-1042-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021634787",
"https://doi.org/10.1007/s00438-015-1042-6"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.114.130393",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022083363"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng.2007.20",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022417632",
"https://doi.org/10.1038/ng.2007.20"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkv1007",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023189778"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp616",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023247882"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2014.02.012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024412579"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.193433.112",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025334496"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.190264497",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025522934"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/2041-210x.12628",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025681872"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ydbio.2007.06.004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026139290"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature05960",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027567406",
"https://doi.org/10.1038/nature05960"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/sciadv.1600991",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027831728"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.166397.113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028161991"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s004250050706",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028936453",
"https://doi.org/10.1007/s004250050706"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bib/bbs017",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029766327"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2012.00019",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031880413"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nplants.2016.130",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033844762",
"https://doi.org/10.1038/nplants.2016.130"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncomms4476",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034541267",
"https://doi.org/10.1038/ncomms4476"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/dvg.1020150206",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038836431"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/dvg.1020150206",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038836431"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.104.023549",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040305195"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/msw046",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043817932"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.16.00399",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044323942"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2005.02617.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044620157"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2005.02617.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044620157"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gks042",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045678648"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.111.094151",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045765852"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/sysbio/syq010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046004748"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.114.129122",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046019802"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0092-8674(93)90522-r",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046174557"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1103542108",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046424220"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1242/dev.111955",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047325922"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1742-4658.2007.05642.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049214410"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1469-8137.2007.02252.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049585414"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2011.00034",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049609284"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.107.057596",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049962128"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/msb.2011.75",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053089433"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/msb.2011.75",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053089433"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btu638",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053282140"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1164645",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062458923"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/2394655",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1069909561"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4161/15592316.2014.970442",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072288439"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1075216835",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1078408213",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1082849191",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1083370305",
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.jhered.a102629",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083482749"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.jhered.a101971",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083616313"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cub.2017.01.052",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084068980"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.16.00878",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084199418"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkx382",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085329795"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1701101114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085731727"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molp.2017.07.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090920298"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molp.2017.07.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090920298"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/j.1537-2197.1983.tb06411.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1100746895"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.17.00791",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1100835055"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.17.00791",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1100835055"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41467-018-03238-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1101130577",
"https://doi.org/10.1038/s41467-018-03238-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41467-018-03238-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1101130577",
"https://doi.org/10.1038/s41467-018-03238-4"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-12",
"datePublishedReg": "2019-12-01",
"description": "Maize is monecious, with separate male and female inflorescences. Maize flowers are initially bisexual but achieve separate sexual identities through organ arrest. Loss-of-function mutants in the jasmonic acid (JA) pathway have only female flowers due to failure to abort silks in the tassel. Tasselseed5 (Ts5) shares this phenotype but is dominant. Positional cloning and transcriptomics of tassels identified an ectopically expressed gene in the CYP94B subfamily, Ts5 (ZmCYP94B1). CYP94B enzymes are wound inducible and inactivate bioactive jasmonoyl-L-isoleucine (JA-Ile). Consistent with this result, tassels and wounded leaves of Ts5 mutants displayed lower JA and JA-lle precursors and higher 12OH-JA-lle product than the wild type. Furthermore, many wounding and jasmonate pathway genes were differentially expressed in Ts5 tassels. We propose that the Ts5 phenotype results from the interruption of JA signaling during sexual differentiation via the upregulation of ZmCYP94B1 and that its proper expression maintains maize monoecy.",
"genre": "research_article",
"id": "sg:pub.10.1038/s42003-019-0354-1",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.5063792",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.5019062",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.3480022",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1300829",
"issn": [
"2399-3642"
],
"name": "Communications Biology",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "2"
}
],
"name": "Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize",
"pagination": "114",
"productId": [
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/s42003-019-0354-1"
]
},
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"a1913b408bb564ebdb68e88e547d9538092b7f07b951ac9575799f2c8227b9ea"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1112969889"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101719179"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30937397"
]
}
],
"sameAs": [
"https://doi.org/10.1038/s42003-019-0354-1",
"https://app.dimensions.ai/details/publication/pub.1112969889"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-15T09:02",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000375_0000000375/records_91456_00000001.jsonl",
"type": "ScholarlyArticle",
"url": "https://www.nature.com/articles/s42003-019-0354-1"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s42003-019-0354-1'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s42003-019-0354-1'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s42003-019-0354-1'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s42003-019-0354-1'
This table displays all metadata directly associated to this object as RDF triples.
317 TRIPLES
21 PREDICATES
99 URIs
21 LITERALS
9 BLANK NODES