A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-12

AUTHORS

Arvind K. Subbaraj, Jan Huege, Karl Fraser, Mingshu Cao, Susanne Rasmussen, Marty Faville, Scott J. Harrison, Chris S. Jones

ABSTRACT

Perennial ryegrass (Lolium perenne) is integral to temperate pastoral agriculture, which contributes most of the milk and meat production worldwide. Chemical profiles and diversity of ryegrass offer several opportunities to harness specific traits and elucidate underlying biological mechanisms for forage improvement. We conducted a large-scale metabolomics study of perennial ryegrass comprising 715 genotypes, representing 118 populations from 21 countries. Liquid/gas chromatography-mass spectrometry based targeted and non-targeted techniques were used to analyse fructan oligosaccharides, lipids, fatty acid methyl esters, polar and semi-polar compounds. Fructan diversity across all genotypes was evaluated, high- and low-sugar groups identified, and fructan accumulation mechanisms explored. Metabolites differentiating the two groups were characterised, modules and pathways they represent deduced, and finally, visualisation and interpretation provided in a biological context. We also demonstrate a workflow for large-scale metabolomics studies from raw data through to statistical and pathway analysis. Raw files and metadata are available at the MetaboLights database. More... »

PAGES

87

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s42003-019-0289-6

DOI

http://dx.doi.org/10.1038/s42003-019-0289-6

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1112507534

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30854479


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