The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2018-12

AUTHORS

Daisuke Fujinami, Abdullah-Al -Mahin, Khaled M Elsayed, Mohammad R Islam, Jun-Ichi Nagao, Urmi Roy, Sabrina Momin, Takeshi Zendo, Daisuke Kohda, Kenji Sonomoto

ABSTRACT

The lantibiotic nukacin ISK-1 exerts antimicrobial activity through binding to lipid II. Here, we perform NMR analyses of the structure of nukacin ISK-1 and the interaction with lipid II. Unexpectedly, nukacin ISK-1 exists in two structural states in aqueous solution, with an interconversion rate on a time scale of seconds. The two structures differ in the relative orientations of the two lanthionine rings, ring A and ring C. Chemical shift perturbation induced by the titration of lipid II reveals that only one state was capable of binding to lipid II. On the molecular surface of the active state, a multiple hydrogen-bonding site formed by amino acid residues in the ring A region is adjacent to a hydrophobic surface formed by residues in the ring C region, and we propose that these sites interact with the pyrophosphate moiety and the isoprene chain of the lipid II molecule, respectively. More... »

PAGES

150

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s42003-018-0150-3

DOI

http://dx.doi.org/10.1038/s42003-018-0150-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1107108102

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30272026


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41 schema:description The lantibiotic nukacin ISK-1 exerts antimicrobial activity through binding to lipid II. Here, we perform NMR analyses of the structure of nukacin ISK-1 and the interaction with lipid II. Unexpectedly, nukacin ISK-1 exists in two structural states in aqueous solution, with an interconversion rate on a time scale of seconds. The two structures differ in the relative orientations of the two lanthionine rings, ring A and ring C. Chemical shift perturbation induced by the titration of lipid II reveals that only one state was capable of binding to lipid II. On the molecular surface of the active state, a multiple hydrogen-bonding site formed by amino acid residues in the ring A region is adjacent to a hydrophobic surface formed by residues in the ring C region, and we propose that these sites interact with the pyrophosphate moiety and the isoprene chain of the lipid II molecule, respectively.
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