Comparative transcriptome profiling of low light tolerant and sensitive rice varieties induced by low light stress at active tillering stage. View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-12

AUTHORS

Sudhanshu Sekhar, Darshan Panda, Jitendra Kumar, Niharika Mohanty, Monalisha Biswal, Mirza J Baig, Awadhesh Kumar, Ngangkham Umakanta, Sangamitra Samantaray, Sharat K Pradhan, Birendra P Shaw, Padmini Swain, Lambodar Behera

ABSTRACT

Low light intensity is a great limitation for grain yield and quality in rice. However, yield is not significantly reduced in low light tolerant rice varieties. The work therefore planned for comparative transcriptome profiling under low light stress to decipher the genes involved and molecular mechanism of low light tolerance in rice. At active tillering stage, 50% low light exposure for 1 day, 3 days and 5 days were given to Swarnaprabha (low light tolerant) and IR8 (low light sensitive) rice varieties. Illumina (HiSeq) platform was used for transcriptome sequencing. A total of 6,652 and 12,042 genes were differentially expressed due to low light intensity in Swarnaprabha and IR8, respectively as compared to control. CAB, LRP, SBPase, MT15, TF PCL1 and Photosystem I & II complex related gene expressions were mostly increased in Swarnaprabha upon longer duration of low light exposure which was not found in IR8 as compared to control. Their expressions were validated by qRT-PCR. Overall study suggested that the maintenance of grain yield in the tolerant variety under low light might be results of accelerated expression of the genes which enable the plant to keep the photosynthetic processes moving at the same pace even under low light. More... »

PAGES

5753

References to SciGraph publications

Journal

TITLE

Scientific Reports

ISSUE

1

VOLUME

9

Author Affiliations

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s41598-019-42170-5

DOI

http://dx.doi.org/10.1038/s41598-019-42170-5

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1113300795

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30962576


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