Transmission patterns of HIV-1 non-R5 strains in Poland View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-12

AUTHORS

Joanna Smoleń-Dzirba, Magdalena Rosińska, Piotr Kruszyński, Janusz Janiec, Mariusz Cycoń, Jolanta Bratosiewicz-Wąsik, Marek Beniowski, Monika Bociąga-Jasik, Elżbieta Jabłonowska, Bartosz Szetela, Tomasz J. Wąsik

ABSTRACT

HIV-1 env sequencing enables predictions of viral coreceptor tropism and phylogenetic investigations of transmission events. The aim of the study was to estimate the contribution of non-R5 strains to the viral spread in Poland. Partial proviral env sequences were retrieved from baseline blood samples of patients with newly diagnosed HIV-1 infection between 2008-2014, including 46 patients with recent HIV-1 infection (RHI), and 246 individuals with long-term infection (LTHI). These sequences were subjected to the genotypic coreceptor tropism predictions and phylogenetic analyses to identify transmission clusters. Overall, 27 clusters with 57 sequences (19.5%) were detected, including 15 sequences (26.3%) from patients with RHI. The proportion of non-R5 strains among all study participants was 23.3% (68/292), and was comparable between patients with RHI and LTHI (11/46, 23.9% vs 57/246, 23.2%; p = 1.000). All 11 patients with non-R5 strains and RHI were men having sex with men (MSM). Among these patients, 4 had viral sequences grouped within phylogenetic cluster with another sequence of non-R5 strain obtained from patient with LTHI, indicating potential acquisition of non-R5 HIV-1 for at least 4/46 (8.7%) patients with RHI. We were unable to confirm the contribution of patients with RHI to the forward transmission of non-R5 strains, but a relatively high proportion of non-R5 strains among them deserves attention due to the limited susceptibility to CCR5 antagonists. More... »

PAGES

4970

References to SciGraph publications

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41598-019-41407-7

    DOI

    http://dx.doi.org/10.1038/s41598-019-41407-7

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1112901492

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30899060


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