Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-12

AUTHORS

Bradley W. Tonnessen, Ana M. Bossa-Castro, Ramil Mauleon, Nickolai Alexandrov, Jan E. Leach

ABSTRACT

Plant disease resistance that is durable and effective against diverse pathogens (broad-spectrum) is essential to stabilize crop production. Such resistance is frequently controlled by Quantitative Trait Loci (QTL), and often involves differential regulation of Defense Response (DR) genes. In this study, we sought to understand how expression of DR genes is orchestrated, with the long-term goal of enabling genome-wide breeding for more effective and durable resistance. We identified short sequence motifs in rice promoters that are shared across Broad-Spectrum DR (BS-DR) genes co-expressed after challenge with three major rice pathogens (Magnaporthe oryzae, Rhizoctonia solani, and Xanthomonas oryzae pv. oryzae) and several chemical elicitors. Specific groupings of these BS-DR-associated motifs, called cis-Regulatory Modules (CRMs), are enriched in DR gene promoters, and the CRMs include cis-elements known to be involved in disease resistance. Polymorphisms in CRMs occur in promoters of genes in resistant relative to susceptible BS-DR haplotypes providing evidence that these CRMs have a predictive role in the contribution of other BS-DR genes to resistance. Therefore, we predict that a CRM signature within BS-DR gene promoters can be used as a marker for future breeding practices to enrich for the most responsive and effective BS-DR genes across the genome. More... »

PAGES

1536

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41598-018-38195-x

    DOI

    http://dx.doi.org/10.1038/s41598-018-38195-x

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1111979335

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30733489


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