Ontology type: schema:ScholarlyArticle Open Access: True
2019-12
AUTHORSTulsi Anna, Sandeep Chakraborty, Chia-Yi Cheng, Vishal Srivastava, Arthur Chiou, Wen-Chuan Kuo
ABSTRACTLeaf senescence provides a unique window to explore the age-dependent programmed degradation at organ label in plants. Here, spectral domain optical coherence tomography (SD-OCT) has been used to study in vivo senescing leaf microstructural changes in the deciduous plant Acer serrulatum Hayata. Hayata leaves show autumn phenology and change color from green to yellow and finally red. SD-OCT image analysis shows distinctive features among different layers of the leaves; merging of upper epidermis and palisade layers form thicker layers in red leaves compared to green leaves. Moreover, A-scan analysis showed a significant (p < 0.001) decrease in the attenuation coefficient (for wavelength range: 1100-1550 nm) from green to red leaves. In addition, the B-scan analysis also showed significant changes in 14 texture parameters extracted from second-order spatial gray level dependence matrix (SGLDM). Among these parameters, a set of three features (energy, skewness, and sum variance), capable of quantitatively distinguishing difference in the microstructures of three different colored leaves, has been identified. Furthermore, classification based on k-nearest neighbors algorithm (k-NN) was found to yield 98% sensitivity, 99% specificity, and 95.5% accuracy. Following the proposed technique, a portable noninvasive tool for quality control in crop management can be anticipated. More... »
PAGES1167
http://scigraph.springernature.com/pub.10.1038/s41598-018-38165-3
DOIhttp://dx.doi.org/10.1038/s41598-018-38165-3
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1111917775
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30718740
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Plant Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "National Yang Ming University",
"id": "https://www.grid.ac/institutes/grid.260770.4",
"name": [
"National Yang-Ming University, Biophotonics and Molecular Imaging Research Center, 11221, Taipei, R.O.C., Taiwan"
],
"type": "Organization"
},
"familyName": "Anna",
"givenName": "Tulsi",
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Taiwan University",
"id": "https://www.grid.ac/institutes/grid.19188.39",
"name": [
"National Yang-Ming University, Biophotonics and Molecular Imaging Research Center, 11221, Taipei, R.O.C., Taiwan",
"National Taiwan University, Graduate Institute of Photonics and Optoelectronics, 10617, Taipei, R.O.C., Taiwan"
],
"type": "Organization"
},
"familyName": "Chakraborty",
"givenName": "Sandeep",
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Yang Ming University",
"id": "https://www.grid.ac/institutes/grid.260770.4",
"name": [
"National Yang-Ming University, Biophotonics and Molecular Imaging Research Center, 11221, Taipei, R.O.C., Taiwan"
],
"type": "Organization"
},
"familyName": "Cheng",
"givenName": "Chia-Yi",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Thapar University",
"id": "https://www.grid.ac/institutes/grid.412436.6",
"name": [
"Thapar University, Electrical and Instrumentation Engineering Department, 147004, Patiala, India"
],
"type": "Organization"
},
"familyName": "Srivastava",
"givenName": "Vishal",
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Yang Ming University",
"id": "https://www.grid.ac/institutes/grid.260770.4",
"name": [
"National Yang-Ming University, Biophotonics and Molecular Imaging Research Center, 11221, Taipei, R.O.C., Taiwan",
"National Yang-Ming University, Institute of Biophotonics, 11221, Taipei, R.O.C., Taiwan"
],
"type": "Organization"
},
"familyName": "Chiou",
"givenName": "Arthur",
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Yang Ming University",
"id": "https://www.grid.ac/institutes/grid.260770.4",
"name": [
"National Yang-Ming University, Biophotonics and Molecular Imaging Research Center, 11221, Taipei, R.O.C., Taiwan",
"National Yang-Ming University, Institute of Biophotonics, 11221, Taipei, R.O.C., Taiwan"
],
"type": "Organization"
},
"familyName": "Kuo",
"givenName": "Wen-Chuan",
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.3174/ajnr.a4285",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000220818"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1469-8137.1999.00423.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002153831"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/01431160802036359",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002248743"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.pcp.a029455",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004912831"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/02757259009532129",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007102045"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tplants.2004.02.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011868968"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s13580-012-0071-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011871972",
"https://doi.org/10.1007/s13580-012-0071-x"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1242/jcs.109116",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012722140"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.114.238899",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013182365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1155/2016/1093734",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017876455"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1439-0523.2004.00989.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021372162"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.arplant.57.032905.105316",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026082516"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/sca.21065",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028109965"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/lapl.200910141",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029089567"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/lapl.200910141",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029089567"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/srep38878",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029588399",
"https://doi.org/10.1038/srep38878"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.24.1.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029730230"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3807/josk.2012.16.2.133",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030300740"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1746-4811-6-17",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031228015",
"https://doi.org/10.1186/1746-4811-6-17"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1746-4811-9-40",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033899795",
"https://doi.org/10.1186/1746-4811-9-40"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jbio.201400153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035756347"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/srep02190",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035955828",
"https://doi.org/10.1038/srep02190"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s2095-3119(16)61393-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037422313"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12551-011-0054-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040667081",
"https://doi.org/10.1007/s12551-011-0054-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/c5ay00377f",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043220444"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00340-007-2743-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046593288",
"https://doi.org/10.1007/s00340-007-2743-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/ers392",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047752379"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2005.02399.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047984774"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/treephys/tpv148",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048604619"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/bip.10297",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049320291"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.113.2.313",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060841279"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1109/tsmc.1973.4309314",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1061792707"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.134.3492.1727",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062476686"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1957169",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062514972"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5121/ijcsit.2012.4615",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072616564"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1364/ao.56.00d108",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083961858"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.plaphy.2017.06.025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1086119981"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-12",
"datePublishedReg": "2019-12-01",
"description": "Leaf senescence provides a unique window to explore the age-dependent programmed degradation at organ label in plants. Here, spectral domain optical coherence tomography (SD-OCT) has been used to study in vivo senescing leaf microstructural changes in the deciduous plant Acer serrulatum Hayata. Hayata leaves show autumn phenology and change color from green to yellow and finally red. SD-OCT image analysis shows distinctive features among different layers of the leaves; merging of upper epidermis and palisade layers form thicker layers in red leaves compared to green leaves. Moreover, A-scan analysis showed a significant (p\u2009<\u20090.001) decrease in the attenuation coefficient (for wavelength range: 1100-1550\u2009nm) from green to red leaves. In addition, the B-scan analysis also showed significant changes in 14 texture parameters extracted from second-order spatial gray level dependence matrix (SGLDM). Among these parameters, a set of three features (energy, skewness, and sum variance), capable of quantitatively distinguishing difference in the microstructures of three different colored leaves, has been identified. Furthermore, classification based on k-nearest neighbors algorithm (k-NN) was found to yield 98% sensitivity, 99% specificity, and 95.5% accuracy. Following the proposed technique, a portable noninvasive tool for quality control in crop management can be anticipated.",
"genre": "research_article",
"id": "sg:pub.10.1038/s41598-018-38165-3",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1045337",
"issn": [
"2045-2322"
],
"name": "Scientific Reports",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "9"
}
],
"name": "Elucidation of microstructural changes in leaves during senescence using spectral domain optical coherence tomography",
"pagination": "1167",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"e0e18eaf192faec605d6b4c091a7924ce907147af119655cc537df8b11b0b4fc"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30718740"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101563288"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/s41598-018-38165-3"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1111917775"
]
}
],
"sameAs": [
"https://doi.org/10.1038/s41598-018-38165-3",
"https://app.dimensions.ai/details/publication/pub.1111917775"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T09:01",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000330_0000000330/records_116376_00000000.jsonl",
"type": "ScholarlyArticle",
"url": "https://www.nature.com/articles/s41598-018-38165-3"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41598-018-38165-3'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41598-018-38165-3'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41598-018-38165-3'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41598-018-38165-3'
This table displays all metadata directly associated to this object as RDF triples.
220 TRIPLES
21 PREDICATES
65 URIs
21 LITERALS
9 BLANK NODES