Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-06-12

AUTHORS

Thong T. Nguyen, Kushal Suryamohan, Boney Kuriakose, Vasantharajan Janakiraman, Mike Reichelt, Subhra Chaudhuri, Joseph Guillory, Neethu Divakaran, P. E. Rabins, Ridhi Goel, Bhabesh Deka, Suman Sarkar, Preety Ekka, Yu-Chih Tsai, Derek Vargas, Sam Santhosh, Sangeetha Mohan, Chen-Shan Chin, Jonas Korlach, George Thomas, Azariah Babu, Somasekar Seshagiri

ABSTRACT

We sequenced the Hyposidra talaca NPV (HytaNPV) double stranded circular DNA genome using PacBio single molecule sequencing technology. We found that the HytaNPV genome is 139,089 bp long with a GC content of 39.6%. It encodes 141 open reading frames (ORFs) including the 37 baculovirus core genes, 25 genes conserved among lepidopteran baculoviruses, 72 genes known in baculovirus, and 7 genes unique to the HytaNPV genome. It is a group II alphabaculovirus that codes for the F protein and lacks the gp64 gene found in group I alphabaculovirus viruses. Using RNA-seq, we confirmed the expression of the ORFs identified in the HytaNPV genome. Phylogenetic analysis showed HytaNPV to be closest to BusuNPV, SujuNPV and EcobNPV that infect other tea pests, Buzura suppressaria, Sucra jujuba, and Ectropis oblique, respectively. We identified repeat elements and a conserved non-coding baculovirus element in the genome. Analysis of the putative promoter sequences identified motif consistent with the temporal expression of the genes observed in the RNA-seq data. More... »

PAGES

8924

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s41598-018-27084-y

DOI

http://dx.doi.org/10.1038/s41598-018-27084-y

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1104438435

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29895987


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