Geo-referenced population-specific microsatellite data across American continents, the MacroPopGen Database View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-12

AUTHORS

Elizabeth R Lawrence, Javiera N Benavente, Jean-Michel Matte, Kia Marin, Zachery R R Wells, Thaïs A Bernos, Nia Krasteva, Andrew Habrich, Gabrielle A Nessel, Ramela Arax Koumrouyan, Dylan J Fraser

ABSTRACT

Population genetic data from nuclear DNA has yet to be synthesized to allow broad scale comparisons of intraspecific diversity versus species diversity. The MacroPopGen database collates and geo-references vertebrate population genetic data across the Americas from 1,308 nuclear microsatellite DNA studies, 897 species, and 9,090 genetically distinct populations where genetic differentiation (FST) was measured. Caribbean populations were particularly distinguished from North, Central, and South American populations, in having higher differentiation (FST = 0.12 vs. 0.07-0.09) and lower mean numbers of alleles (MNA = 4.11 vs. 4.84-5.54). While mammalian populations had lower MNA (4.86) than anadromous fish, reptiles, amphibians, freshwater fish, and birds (5.34-7.81), mean heterozygosity was largely similar across groups (0.57-0.63). Mean FST was consistently lowest in anadromous fishes (0.06) and birds (0.05) relative to all other groups (0.09-0.11). Significant differences in Family/Genera variance among continental regions or taxonomic groups were also observed. MacroPopGen can be used in many future applications including latitudinal analyses, spatial analyses (e.g. central-margin), taxonomic comparisons, regional assessments of anthropogenic impacts on biodiversity, and conservation of wild populations. More... »

PAGES

14

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s41597-019-0024-7

DOI

http://dx.doi.org/10.1038/s41597-019-0024-7

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1113182137

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30944329


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curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41597-019-0024-7'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41597-019-0024-7'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41597-019-0024-7'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41597-019-0024-7'


 

This table displays all metadata directly associated to this object as RDF triples.

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