A community resource for paired genomic and metabolomic data mining View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2021-02-15

AUTHORS

Michelle A. Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D. Acharya, Alexander A. Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T. Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D. Bauman, Martin Baunach, Christine Beemelmanns, J. Michael Beman, María Victoria Berlanga-Clavero, Alex A. Blacutt, Helge B. Bode, Anne Boullie, Asker Brejnrod, Tim S. Bugni, Alexandra Calteau, Liu Cao, Víctor J. Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B. Chase, Marc G. Chevrette, Leticia V. Costa-Lotufo, Jason M. Crawford, Cameron R. Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M. Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J. Dutton, Anna Edlund, David P. Fewer, Neha Garg, Julia M. Gauglitz, Emily C. Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G. Guillén Matus, Eric J. N. Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R. Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L. Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M. König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C. Little, Katherine N. Maloney, Daniel Männle, Christian Martin H., Andrew C. McAvoy, Willam W. Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S. Moore, Michael W. Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C. O’Neill, Elizabeth I. Parkinson, Daniel Petras, Jörn Piel, Emily C. Pierce, Karine Pires, Raphael Reher, Diego Romero, M. Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M. Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D. Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J. Thomson, Nicholas J. Tobias, Amaro E. Trindade-Silva, Gilles P. van Wezel, Mingxun Wang, Kelly C. Weldon, Fan Zhang, Nadine Ziemert, Katherine R. Duncan, Max Crüsemann, Simon Rogers, Pieter C. Dorrestein, Marnix H. Medema, Justin J. J. van der Hooft

ABSTRACT

Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

PAGES

363-368

Journal

TITLE

Nature Chemical Biology

ISSUE

4

VOLUME

17

Author Affiliations

  • Bioinformatics Group, Wageningen University, Wageningen, the Netherlands
  • Netherlands eScience Center, Amsterdam, the Netherlands
  • Wisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI, USA
  • Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
  • Department of Psychiatry, University of California San Diego, San Diego, CA, USA
  • Leibniz Institute for Natural Product Research and Infection Biology e.V. Hans-Knöll-Institute (HKI), Jena, Germany
  • Microbiology Department, Biology Faculty, Jenderal Soedirman University, Purwokerto, Indonesia
  • Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil
  • Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
  • University of Potsdam, Institute of Biochemistry and Biology, Potsdam-Golm, Germany
  • Sierra Nevada Research Institute, University of California Merced, Merced, CA, USA
  • Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Departamento de Microbiología, Universidad de Málaga, Málaga, Spain
  • Department of Microbiology and Plant Pathology, University of California Riverside, Riverside, CA, USA
  • Max-Planck-Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, Marburg, Germany
  • Institut Pasteur, Collection of Cyanobacteria, Paris, France
  • Pharmaceutical Sciences Division, University of Wisconsin-Madison, Madison, WI, USA
  • Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme, Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
  • Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
  • Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, the Netherlands
  • Department of Microbiology, University of Helsinki, Helsinki, Finland
  • Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA
  • Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, USA
  • Molecular Parasitology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium
  • Technische Universität Berlin, Institut für Chemie, Berlin, Germany
  • Microbial Biotechnology, Institute of Biology, Leiden University, Leiden, the Netherlands
  • Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA
  • Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
  • School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA
  • Pharmaceutical Biology Department, Pharmaceutical Institute, Eberhard Karls University Tübingen, Tübingen, Germany
  • Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA, USA
  • Charité, University Medicine Berlin, Berlin-Brandenburg Center for Regenerative Therapy (BCRT), Campus Virchow Klinikum, Berlin, Germany
  • Korean Lichen Research Institute, Sunchon National University, Sunchon, Republic of Korea
  • Naicons Srl, Milano, Italy
  • College of Pharmacy, Sookmyung Women’s University, Seoul, Korea
  • German Centre for Infection Research (DZIF), Tübingen, Germany
  • Department of Chemistry, Northwestern University, Evanston, IL, USA
  • School of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea
  • Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
  • Institute for Pharmaceutical Biology, University of Bonn, Bonn, Germany
  • Department of Chemistry, Princeton University, Princeton, NJ, USA
  • Section of Microbiology, University of Copenhagen, Copenhagen, Denmark
  • Department of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, USA
  • Department of Chemistry, Point Loma Nazarene University, San Diego, CA, USA
  • Interfaculty Institute for Microbiology and Infection Medicine Tübingen, Microbiology and Biotechnology, University of Tübingen, Tübingen, Germany
  • Centro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología, Panama, Republic of Panama
  • Carl R. Woese Institute for Genomic Biology and Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
  • Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA
  • School of Chemistry, University of Nottingham, Nottingham, UK
  • Department of Chemistry and Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN, USA
  • Institute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zürich, Zürich, Switzerland
  • Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
  • Instituto Federal de Santa Catarina, Florianópolis, Santa Catarina, Brazil
  • Phytochemistry and Plant Systematics Department, Division of Pharmaceutical Industries, National Research Centre, Cairo, Egypt
  • The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
  • Department of Biology, Memorial University of Newfoundland, St. John’s, Canada
  • LOEWE-Centre for Translational Biodiversity Genomics, Frankfurt am Main, Germany
  • Departamento de Fisiologia e Farmacologia, Faculdade de Medicina, Universidade Federal do Ceará, Fortaleza, Ceará, Brazil
  • University of Strathclyde, Strathclyde Institute of Pharmacy and Biomedical Sciences, Glasgow, UK
  • School of Computing Science, University of Glasgow, Glasgow, UK
  • Department of Pharmacology and Pediatrics, University of California San Diego, La Jolla, CA, USA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41589-020-00724-z

    DOI

    http://dx.doi.org/10.1038/s41589-020-00724-z

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1135362871

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/33589842


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