Ontology type: schema:ScholarlyArticle
2018-10
AUTHORSMarc A. Marti-Renom, Genevieve Almouzni, Wendy A. Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M. Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo, Maria-Elena Torres-Padilla
ABSTRACTDue to recent advances in experimental and theoretical approaches, the dynamic three-dimensional organization (3D) of the nucleus has become a very active area of research in life sciences. We now understand that the linear genome is folded in ways that may modulate how genes are expressed during the basic functioning of cells. Importantly, it is now possible to build 3D models of how the genome folds within the nucleus and changes over time (4D). Because genome folding influences its function, this opens exciting new possibilities to broaden our understanding of the mechanisms that determine cell fate. However, the rapid evolution of methods and the increasing complexity of data can result in ambiguity and reproducibility challenges, which may hamper the progress of this field. Here, we describe such challenges ahead and provide guidelines to think about strategies for shared standardized validation of experimental 4D nucleome data sets and models. More... »
PAGES1352-1358
http://scigraph.springernature.com/pub.10.1038/s41588-018-0236-3
DOIhttp://dx.doi.org/10.1038/s41588-018-0236-3
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1107189166
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30262815
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats",
"id": "https://www.grid.ac/institutes/grid.425902.8",
"name": [
"Gene Regulation, Stem Cells and Cancer Program, CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain",
"Universitat Pompeu Fabra (UPF), Barcelona, Spain",
"ICREA, Barcelona, Spain"
],
"type": "Organization"
},
"familyName": "Marti-Renom",
"givenName": "Marc A.",
"id": "sg:person.01026171601.65",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01026171601.65"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute Curie",
"id": "https://www.grid.ac/institutes/grid.418596.7",
"name": [
"Institut Curie, PSL Research University, CNRS UMR3664, Paris, France"
],
"type": "Organization"
},
"familyName": "Almouzni",
"givenName": "Genevieve",
"id": "sg:person.0645166230.83",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0645166230.83"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Medical Research Council Institute of Genetics and Molecular Medicine",
"id": "https://www.grid.ac/institutes/grid.415854.9",
"name": [
"MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine at the University of Edinburgh, Edinburgh, UK"
],
"type": "Organization"
},
"familyName": "Bickmore",
"givenName": "Wendy A.",
"id": "sg:person.01164404501.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01164404501.34"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Laboratoire de Biologie Mol\u00e9cualire Eucaryote (LBME), Centre de Biologie Int\u00e9grative (CBI), University of Toulouse, UPS, CNRS, Toulouse, France"
],
"type": "Organization"
},
"familyName": "Bystricky",
"givenName": "Kerstin",
"id": "sg:person.0576467314.84",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0576467314.84"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Human Genetics",
"id": "https://www.grid.ac/institutes/grid.462268.c",
"name": [
"Institute of Human Genetics, UMR 9002 of the CNRS and the University of Montpellier, Montpellier, France"
],
"type": "Organization"
},
"familyName": "Cavalli",
"givenName": "Giacomo",
"id": "sg:person.01246613004.88",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01246613004.88"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Florida State University",
"id": "https://www.grid.ac/institutes/grid.255986.5",
"name": [
"Nuclear Dynamics Programme, The Babraham Institute, Cambridge, UK",
"Department of Biological Science, Florida State University, Tallahassee, Florida, USA"
],
"type": "Organization"
},
"familyName": "Fraser",
"givenName": "Peter",
"id": "sg:person.0652122170.60",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0652122170.60"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Basel",
"id": "https://www.grid.ac/institutes/grid.6612.3",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"University of Basel, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Gasser",
"givenName": "Susan M.",
"id": "sg:person.01367241125.08",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01367241125.08"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Friedrich Miescher Institute",
"id": "https://www.grid.ac/institutes/grid.482245.d",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Giorgetti",
"givenName": "Luca",
"id": "sg:person.0713145365.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0713145365.99"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, Paris, France"
],
"type": "Organization"
},
"familyName": "Heard",
"givenName": "Edith",
"id": "sg:person.01205631542.42",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205631542.42"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Berlin Institute of Health",
"id": "https://www.grid.ac/institutes/grid.484013.a",
"name": [
"Dipartimento di Fisica \u201cE. Pancini\u201d, Universit\u00e0 di Napoli \u201cFederico II\u201d, INFN Sezione di Napoli, Naples, Italy",
"Berlin Institute of Health, MDC-Berlin, Berlin, Germany"
],
"type": "Organization"
},
"familyName": "Nicodemi",
"givenName": "Mario",
"id": "sg:person.0714371637.39",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0714371637.39"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centre de Biochimie Structurale",
"id": "https://www.grid.ac/institutes/grid.462825.f",
"name": [
"Centre de Biochimie Structurale, CNRS UMR5048, INSERM U1054, Universite de Montpellier, Montpellier, France"
],
"type": "Organization"
},
"familyName": "Nollmann",
"givenName": "Marcelo",
"id": "sg:person.01355046406.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01355046406.15"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Barcelona",
"id": "https://www.grid.ac/institutes/grid.5841.8",
"name": [
"Institute for Research in Biomedicine Barcelona (IRB), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain",
"Departament de Bioquimica i Biologia Molecular, Universitat de Barcelona, Barcelona, Spain"
],
"type": "Organization"
},
"familyName": "Orozco",
"givenName": "Modesto",
"id": "sg:person.0722025747.78",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0722025747.78"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Humboldt University of Berlin",
"id": "https://www.grid.ac/institutes/grid.7468.d",
"name": [
"Berlin Institute of Health, MDC-Berlin, Berlin, Germany",
"Epigenetic Regulation and Chromatin Architecture, Berlin Institute for Medical Systems Biology, Max Delbr\u00fcck Center for Molecular Medicine, Berlin, Germany",
"Institute for Biology, Humboldt-Universitat zu Berlin, Berlin, Germany"
],
"type": "Organization"
},
"familyName": "Pombo",
"givenName": "Ana",
"id": "sg:person.0776734405.58",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0776734405.58"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ludwig Maximilian University of Munich",
"id": "https://www.grid.ac/institutes/grid.5252.0",
"name": [
"Institute of Epigenetics and Stem Cells (IES), Helmholtz Zentrum Munchen, M\u00fcnchen, Germany",
"Faculty of Biology, Ludwig-Maximilians Universitat, M\u00fcnchen, Germany"
],
"type": "Organization"
},
"familyName": "Torres-Padilla",
"givenName": "Maria-Elena",
"id": "sg:person.0621715401.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0621715401.23"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/nar/gkw135",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000877955"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2015.09.028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001109100"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1058040",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001517867"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0076-6879(03)74017-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001830349"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.celrep.2016.04.085",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002392209"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/srep38970",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003052701",
"https://doi.org/10.1038/srep38970"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1065366",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003114993"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.200409091",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003193563"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.febslet.2015.05.012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003625459"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1088/1478-3975/6/2/025008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004490382"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1088/1478-3975/6/2/025008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004490382"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.3383",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004810887",
"https://doi.org/10.1038/nbt.3383"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sdata.2016.18",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005603549",
"https://doi.org/10.1038/sdata.2016.18"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sdata.2016.18",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005603549",
"https://doi.org/10.1038/sdata.2016.18"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncomms9733",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005707390",
"https://doi.org/10.1038/ncomms9733"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.str.2015.05.013",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006304470"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2011.09.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006493865"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.str.2013.07.021",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006870415"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/boc.201600008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006877377"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2013.02.022",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008291683"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature07287",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009117288",
"https://doi.org/10.1038/nature07287"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.2057",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009567577",
"https://doi.org/10.1038/nbt.2057"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1134053",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009723246"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.135.6.1685",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010570675"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkv221",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010785450"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2008.03.024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011271340"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1097-2765(00)80143-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012132995"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08973",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012207766",
"https://doi.org/10.1038/nature08973"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1364/boe.7.000726",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012447203"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/boc.201600024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013698338"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2013.12.001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014213089"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.281964.116",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014991788"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1364/oe.23.007734",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015771643"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1242369",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016582240"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gku698",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017384645"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.90.16.7854",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017839943"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1042/bst20120238",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019482215"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1042/bst20120238",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019482215"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.2680",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020697396",
"https://doi.org/10.1038/nsmb.2680"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2016.01.001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020768760"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1186777",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021233025"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1186777",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021233025"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1067799",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021591890"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2010.12.026",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021681293"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature12593",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022035194",
"https://doi.org/10.1038/nature12593"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gku109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023022431"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2012.03.051",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024158423"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1259587",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024423008"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.1936",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025455535",
"https://doi.org/10.1038/nsmb.1936"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.7554/elife.15316",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025764836"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature20158",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026142902",
"https://doi.org/10.1038/nature20158"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature15740",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027329620",
"https://doi.org/10.1038/nature15740"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pcbi.1002125",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028265624"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.176586.114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028581281"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.176586.114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028581281"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11245",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028790868",
"https://doi.org/10.1038/nature11245"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/srep29775",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028981829",
"https://doi.org/10.1038/srep29775"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11247",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029065430",
"https://doi.org/10.1038/nature11247"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkq644",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029327419"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4939-4035-6_6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029534959",
"https://doi.org/10.1007/978-1-4939-4035-6_6"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.251694.114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030296256"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2522",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030550694",
"https://doi.org/10.1038/nrg2522"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aaa6090",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030599272"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.2277",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030733979",
"https://doi.org/10.1038/nmeth.2277"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2014.09.039",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032174881"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev-cellbio-101011-155824",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032208621"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-62703-526-2_2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032234731",
"https://doi.org/10.1007/978-1-62703-526-2_2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pcbi.1004306",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032451988"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.134.6.1349",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032940553"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/28.1.235",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035055456"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2016.09.037",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035198067"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncomms8147",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035858967",
"https://doi.org/10.1038/ncomms8147"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aaf8084",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036639143"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2011.12.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036900105"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2011.12.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036900105"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/bs.adgen.2016.08.004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037154662"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pcbi.1003019",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037750907"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2015.01.054",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038348830"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-010-9177-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038840634",
"https://doi.org/10.1007/s10577-010-9177-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-010-9177-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038840634",
"https://doi.org/10.1007/s10577-010-9177-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-010-9177-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038840634",
"https://doi.org/10.1007/s10577-010-9177-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bib/bbv086",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039635379"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pgen.1004187",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040460308"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.2305",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040604759",
"https://doi.org/10.1038/nmeth.2305"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35057062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042854081",
"https://doi.org/10.1038/35057062"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35057062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042854081",
"https://doi.org/10.1038/35057062"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1113/jphysiol.2012.230532",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042996034"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.157792.113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043651652"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/cshperspect.a012310",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044729995"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.611011",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044830715"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2014.03.025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045111518"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0960-9822(02)00695-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045443376"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature14222",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046074449",
"https://doi.org/10.1038/nature14222"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg3454",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046147193",
"https://doi.org/10.1038/nrg3454"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.biochem.77.060407.135530",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047300395"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2011.03.032",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047875821"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2014.11.021",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047951603"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1518552112",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049109976"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13059-016-1081-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049562986",
"https://doi.org/10.1186/s13059-016-1081-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13059-016-1081-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049562986",
"https://doi.org/10.1186/s13059-016-1081-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0960-9822(02)70783-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049657528"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1319097110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050808466"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1420024112",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051029267"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.241422.114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051139500"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0012768",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051342995"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature14590",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051474676",
"https://doi.org/10.1038/nature14590"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature13714",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051936100",
"https://doi.org/10.1038/nature13714"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.str.2011.08.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052356388"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1364/boe.7.002163",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052862735"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1103/physreve.57.5888",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060722347"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1103/physreve.57.5888",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060722347"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature21411",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084128543",
"https://doi.org/10.1038/nature21411"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature21429",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084128557",
"https://doi.org/10.1038/nature21429"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature21711",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084128601",
"https://doi.org/10.1038/nature21711"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncomms14665",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084128894",
"https://doi.org/10.1038/ncomms14665"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.3402",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085051627",
"https://doi.org/10.1038/nsmb.3402"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.3402",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085051627",
"https://doi.org/10.1038/nsmb.3402"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2017.05.004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085444099"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.4325",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085981797",
"https://doi.org/10.1038/nmeth.4325"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.4325",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085981797",
"https://doi.org/10.1038/nmeth.4325"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.4329",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085984148",
"https://doi.org/10.1038/nmeth.4329"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.4329",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085984148",
"https://doi.org/10.1038/nmeth.4329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aag0025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090909436"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aag0025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090909436"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/1873-3468.12778",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090956758"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature23884",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1091600986",
"https://doi.org/10.1038/nature23884"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature23884",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1091600986",
"https://doi.org/10.1038/nature23884"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature24281",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1091924058",
"https://doi.org/10.1038/nature24281"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature24281",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1091924058",
"https://doi.org/10.1038/nature24281"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2017.09.043",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092293106"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/551s51a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092573768",
"https://doi.org/10.1038/551s51a"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/551s51a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092573768",
"https://doi.org/10.1038/551s51a"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41467-017-01962-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092832030",
"https://doi.org/10.1038/s41467-017-01962-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41588-017-0030-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1100275617",
"https://doi.org/10.1038/s41588-017-0030-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aao6135",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1100474006"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41588-018-0098-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1103265664",
"https://doi.org/10.1038/s41588-018-0098-8"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2018.05.024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1104465844"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2018.05.024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1104465844"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.aat5641",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1106419489"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-10",
"datePublishedReg": "2018-10-01",
"description": "Due to recent advances in experimental and theoretical approaches, the dynamic three-dimensional organization (3D) of the nucleus has become a very active area of research in life sciences. We now understand that the linear genome is folded in ways that may modulate how genes are expressed during the basic functioning of cells. Importantly, it is now possible to build 3D models of how the genome folds within the nucleus and changes over time (4D). Because genome folding influences its function, this opens exciting new possibilities to broaden our understanding of the mechanisms that determine cell fate. However, the rapid evolution of methods and the increasing complexity of data can result in ambiguity and reproducibility challenges, which may hamper the progress of this field. Here, we describe such challenges ahead and provide guidelines to think about strategies for shared standardized validation of experimental 4D nucleome data sets and models.",
"genre": "research_article",
"id": "sg:pub.10.1038/s41588-018-0236-3",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.2753736",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1103138",
"issn": [
"1061-4036",
"1546-1718"
],
"name": "Nature Genetics",
"type": "Periodical"
},
{
"issueNumber": "10",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "50"
}
],
"name": "Challenges and guidelines toward 4D nucleome data and model standards",
"pagination": "1352-1358",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"cb9de71e6637fd7e871862f126c7a184bc1d56f61e655fc521330573294f4758"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30262815"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"9216904"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/s41588-018-0236-3"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1107189166"
]
}
],
"sameAs": [
"https://doi.org/10.1038/s41588-018-0236-3",
"https://app.dimensions.ai/details/publication/pub.1107189166"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T21:43",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8687_00000544.jsonl",
"type": "ScholarlyArticle",
"url": "https://www.nature.com/articles/s41588-018-0236-3"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41588-018-0236-3'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41588-018-0236-3'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41588-018-0236-3'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41588-018-0236-3'
This table displays all metadata directly associated to this object as RDF triples.
609 TRIPLES
21 PREDICATES
149 URIs
21 LITERALS
9 BLANK NODES