Genome-centric view of carbon processing in thawing permafrost View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-07-16

AUTHORS

Ben J. Woodcroft, Caitlin M. Singleton, Joel A. Boyd, Paul N. Evans, Joanne B. Emerson, Ahmed A. F. Zayed, Robert D. Hoelzle, Timothy O. Lamberton, Carmody K. McCalley, Suzanne B. Hodgkins, Rachel M. Wilson, Samuel O. Purvine, Carrie D. Nicora, Changsheng Li, Steve Frolking, Jeffrey P. Chanton, Patrick M. Crill, Scott R. Saleska, Virginia I. Rich, Gene W. Tyson

ABSTRACT

As global temperatures rise, large amounts of carbon sequestered in permafrost are becoming available for microbial degradation. Accurate prediction of carbon gas emissions from thawing permafrost is limited by our understanding of these microbial communities. Here we use metagenomic sequencing of 214 samples from a permafrost thaw gradient to recover 1,529 metagenome-assembled genomes, including many from phyla with poor genomic representation. These genomes reflect the diversity of this complex ecosystem, with genus-level representatives for more than sixty per cent of the community. Meta-omic analysis revealed key populations involved in the degradation of organic matter, including bacteria whose genomes encode a previously undescribed fungal pathway for xylose degradation. Microbial and geochemical data highlight lineages that correlate with the production of greenhouse gases and indicate novel syntrophic relationships. Our findings link changing biogeochemistry to specific microbial lineages involved in carbon processing, and provide key information for predicting the effects of climate change on permafrost systems. More... »

PAGES

49-54

References to SciGraph publications

  • 2010-10-30. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree in BMC BIOINFORMATICS
  • 2011-12-01. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2001-03. Permafrost Degradation and Ecological Changes Associated with a WarmingClimate in Central Alaska in CLIMATIC CHANGE
  • 2014-11-17. Fast and sensitive protein alignment using DIAMOND in NATURE METHODS
  • 2014-05-12. The microbial ecology of permafrost in NATURE REVIEWS MICROBIOLOGY
  • 1983. Utilization of xylose by bacteria, yeasts, and fungi in PENTOSES AND LIGNIN
  • 2014-10-31. MS-GF+ makes progress towards a universal database search tool for proteomics in NATURE COMMUNICATIONS
  • 2015-04. Climate change and the permafrost carbon feedback in NATURE
  • 2014-10-22. Methane dynamics regulated by microbial community response to permafrost thaw in NATURE
  • 2011-11-17. The Effects of Permafrost Thaw on Soil Hydrologic, Thermal, and Carbon Dynamics in an Alaskan Peatland in ECOSYSTEMS
  • 2017-12-06. Atmospheric trace gases support primary production in Antarctic desert surface soil in NATURE
  • 2016-01-28. Microbial diversity drives multifunctionality in terrestrial ecosystems in NATURE COMMUNICATIONS
  • 2017-09-11. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life in NATURE MICROBIOLOGY
  • 2007-07-05. Pyrosequencing enumerates and contrasts soil microbial diversity in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2018-02-22. Landscape topography structures the soil microbiome in arctic polygonal tundra in NATURE COMMUNICATIONS
  • 2009-08. Electron transfer in syntrophic communities of anaerobic bacteria and archaea in NATURE REVIEWS MICROBIOLOGY
  • 2013-05-26. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes in NATURE BIOTECHNOLOGY
  • 2012-08-08. Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples in THEORY IN BIOSCIENCES
  • 2012-09-06. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2016. ggplot2, Elegant Graphics for Data Analysis in NONE
  • 2014-02-14. Discovery of a novel methanogen prevalent in thawing permafrost in NATURE COMMUNICATIONS
  • 2004-07-28. Distribution of cell wall components in Sphagnum hyaline cells and in liverwort and hornwort elaters in PLANTA
  • 2008-11-18. Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach in BMC GENOMICS
  • 2011-05-12. Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2014-04-07. CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction in MICROBIOME
  • 2014-02-27. Humic substances as fully regenerable electron acceptors in recurrently anoxic environments in NATURE GEOSCIENCE
  • 2016-10-24. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system in NATURE COMMUNICATIONS
  • 2013-02-05. Genetic analysis of D-xylose metabolism pathways in Gluconobacter oxydans 621H in JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
  • 2012-10-10. A cross-platform toolkit for mass spectrometry and proteomics in NATURE BIOTECHNOLOGY
  • 2015-03-04. Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes in NATURE
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41586-018-0338-1

    DOI

    http://dx.doi.org/10.1038/s41586-018-0338-1

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1105533998

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30013118


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