Phylogenetic rooting using minimal ancestor deviation View Full Text


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Article Info

DATE

2017-06-19

AUTHORS

Fernando Domingues Kümmel Tria, Giddy Landan, Tal Dagan

ABSTRACT

Ancestor–descendent relations play a cardinal role in evolutionary theory. Those relations are determined by rooting phylogenetic trees. Existing rooting methods are hampered by evolutionary rate heterogeneity or the unavailability of auxiliary phylogenetic information. Here we present a rooting approach, the minimal ancestor deviation (MAD) method, which accommodates heterotachy by using all pairwise topological and metric information in unrooted trees. We demonstrate the performance of the method, in comparison to existing rooting methods, by the analysis of phylogenies from eukaryotes and prokaryotes. MAD correctly recovers the known root of eukaryotes and uncovers evidence for the origin of cyanobacteria in the ocean. MAD is more robust and consistent than existing methods, provides measures of the root inference quality and is applicable to any tree with branch lengths. More... »

PAGES

0193

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s41559-017-0193

DOI

http://dx.doi.org/10.1038/s41559-017-0193

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1086071563

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29388565


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