Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2022-05-18

AUTHORS

Rebecca J. Rockett, Jenny Draper, Mailie Gall, Eby M. Sim, Alicia Arnott, Jessica E. Agius, Jessica Johnson-Mackinnon, Winkie Fong, Elena Martinez, Alexander P. Drew, Clement Lee, Christine Ngo, Marc Ramsperger, Andrew N. Ginn, Qinning Wang, Michael Fennell, Danny Ko, Linda Hueston, Lukas Kairaitis, Edward C. Holmes, Matthew N. O’Sullivan, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko

ABSTRACT

Co-infections with different variants of SARS-CoV-2 are a key precursor to recombination events that are likely to drive SARS-CoV-2 evolution. Rapid identification of such co-infections is required to determine their frequency in the community, particularly in populations at-risk of severe COVID-19, which have already been identified as incubators for punctuated evolutionary events. However, limited data and tools are currently available to detect and characterise the SARS-CoV-2 co-infections associated with recognised variants of concern. Here we describe co-infection with the SARS-CoV-2 variants of concern Omicron and Delta in two epidemiologically unrelated adult patients with chronic kidney disease requiring maintenance haemodialysis. Both variants were co-circulating in the community at the time of detection. Genomic surveillance based on amplicon- and probe-based sequencing using short- and long-read technologies identified and quantified subpopulations of Delta and Omicron viruses in respiratory samples. These findings highlight the importance of integrated genomic surveillance in vulnerable populations and provide diagnostic pathways to recognise SARS-CoV-2 co-infection using genomic data. More... »

PAGES

2745

References to SciGraph publications

  • 2019-01-08. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar in GENOME BIOLOGY
  • 2020-07-09. Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling in NATURE MEDICINE
  • 2022-02-17. Humoral response and breakthrough infections with SARS-CoV-2 B.1.617.2 variant in vaccinated maintenance hemodialysis patients in JOURNAL OF NEPHROLOGY
  • 2021-12-23. Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift in NATURE
  • 2021-07-07. Genomic epidemiology of SARS-CoV-2 in the UAE reveals novel virus mutation, patterns of co-infection and tissue specific host immune response in SCIENTIFIC REPORTS
  • 2014-06-18. Pandemic clinical case definitions are non-specific: multiple respiratory viruses circulating in the early phases of the 2009 influenza pandemic in New South Wales, Australia in VIROLOGY JOURNAL
  • 2021-09-09. The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology in NATURE MEDICINE
  • 2021-09-15. Publisher Correction: Genomic epidemiology of SARS-CoV-2 in the UAE reveals novel virus mutation, patterns of co-infection and tissue specific host immune response in SCIENTIFIC REPORTS
  • 2022-02-01. Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity in NATURE
  • 2021-09-16. Case report: change of dominant strain during dual SARS-CoV-2 infection in BMC INFECTIOUS DISEASES
  • 2020-07-15. A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology in NATURE MICROBIOLOGY
  • 2016. ggplot2, Elegant Graphics for Data Analysis in NONE
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41467-022-30518-x

    DOI

    http://dx.doi.org/10.1038/s41467-022-30518-x

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1147958576

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/35585202


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