Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2021-04-16

AUTHORS

Talita Émile Ribeiro Adelino, Marta Giovanetti, Vagner Fonseca, Joilson Xavier, Álvaro Salgado de Abreu, Valdinete Alves do Nascimento, Luiz Henrique Ferraz Demarchi, Marluce Aparecida Assunção Oliveira, Vinícius Lemes da Silva, Arabela Leal e. Silva de Mello, Gabriel Muricy Cunha, Roselene Hans Santos, Elaine Cristina de Oliveira, Jorge Antônio Chamon Júnior, Felipe Campos de Melo Iani, Ana Maria Bispo de Filippis, André Luiz de Abreu, Ronaldo de Jesus, Carlos Frederico Campelo de Albuquerque, Jairo Mendez Rico, Rodrigo Fabiano do Carmo Said, Joscélio Aguiar Silva, Noely Fabiana Oliveira de Moura, Priscila Leite, Lívia Carla Vinhal Frutuoso, Simone Kashima Haddad, Alexander Martínez, Fernanda Khouri Barreto, Cynthia Carolina Vazquez, Rivaldo Venâncio da Cunha, Emerson Luiz Lima Araújo, Stephane Fraga de Oliveira Tosta, Allison de Araújo Fabri, Flávia Löwen Levy Chalhoub, Poliana da Silva Lemos, Fernanda de Bruycker-Nogueira, Gislene Garcia de Castro Lichs, Marina Castilhos Souza Umaki Zardin, Fátima María Cardozo Segovia, Crhistinne Cavalheiro Maymone Gonçalves, Zoraida Del Carmen Fernandez Grillo, Svetoslav Nanev Slavov, Luiz Augusto Pereira, Ana Flávia Mendonça, Felicidade Mota Pereira, Jurandy Júnior Ferraz de Magalhães, Agenor de Castro Moreira dos Santos Júnior, Maricélia Maia de Lima, Rita Maria Ribeiro Nogueira, Aristóteles Góes-Neto, Vasco Ariston de Carvalho Azevedo, Dario Brock Ramalho, Wanderson Kleber Oliveira, Eduardo Marques Macario, Arnaldo Correia de Medeiros, Victor Pimentel, Edward C. Holmes, Tulio de Oliveira, José Lourenço, Luiz Carlos Junior Alcantara

ABSTRACT

Brazil experienced a large dengue virus (DENV) epidemic in 2019, highlighting a continuous struggle with effective control and public health preparedness. Using Oxford Nanopore sequencing, we led field and classroom initiatives for the monitoring of DENV in Brazil, generating 227 novel genome sequences of DENV1-2 from 85 municipalities (2015–2019). This equated to an over 50% increase in the number of DENV genomes from Brazil available in public databases. Using both phylogenetic and epidemiological models we retrospectively reconstructed the recent transmission history of DENV1-2. Phylogenetic analysis revealed complex patterns of transmission, with both lineage co-circulation and replacement. We identified two lineages within the DENV2 BR-4 clade, for which we estimated the effective reproduction number and pattern of seasonality. Overall, the surveillance outputs and training initiative described here serve as a proof-of-concept for the utility of real-time portable sequencing for research and local capacity building in the genomic surveillance of emerging viruses. More... »

PAGES

2296

Journal

TITLE

Nature Communications

ISSUE

1

VOLUME

12

Author Affiliations

  • Laboratório Central de Saúde Pública do Estado de Minas Gerais, Fundação Ezequiel Dias, Belo Horizonte, Minas Gerais, Brazil
  • Laboratório de Flavivírus, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Rio de Janeiro, Brazil
  • Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas e Maria Deane, Fiocruz, Manaus, Amazonas, Brazil
  • Laboratório Central de Saúde Pública do Estado de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil
  • Laboratório Central de Saúde Pública Dr. Giovanni Cysneiros, Goiânia, Goiás, Brazil
  • Laboratório Central de Saúde Pública Professor Gonçalo Moniz, Salvador, Bahia, Brazil
  • Secretaria de Saúde do Estado da Bahia, Salvador, Bahia, Brazil
  • Laboratório Central de Saúde Pública Dr. Milton Bezerra Sobral, Recife, Pernambuco, Brazil
  • Laboratório Central de Saúde Pública do Estado de Mato Grosso, Cuiabá, Mato Grosso, Brazil
  • Laboratório Central de Saúde Pública do Distrito Federal, Brasília, Distrito Federal, Brazil
  • Coordenação Geral dos Laboratórios de Saúde Pública, Secretaria de Vigilância em Saúde, Ministério da Saúde, Brasília, Distrito Federal, Brazil
  • Organização Pan-Americana da Saúde/Organização Mundial da Saúde, Brasília, Distrito Federal, Brazil
  • Coordenação Geral das Arboviroses, Secretaria de Vigilância em Saúde/Ministério da Saúde, Brasília, Distrito Federal, Brazil
  • Fundação Hemocentro de Ribeirão Preto, Ribeirão Preto, São Paulo, Brazil
  • Gorgas Memorial Institute for Health Studies, Panama, Panama
  • Universidade Federal da Bahia, Vitória da Conquista, Bahia, Brazil
  • Laboratorio Central de Salud Pública, Asunción, Paraguay
  • Fundação Oswaldo Cruz, Bio-Manguinhos, Rio de Janeiro, Rio de Janeiro, Brazil
  • Instituto Evandro Chagas, Belém, Pará, Brazil
  • Instituto de Investigaciones en Ciencias de la Salud, San Lorenzo, Paraguay
  • Secretaria de Estado de Saúde de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil
  • Fundação Oswaldo Cruz, Campo Grande, Mato Grosso do Sul, Brazil
  • Secretaria de Saúde de Feira de Santana, Feira de Santana, Bahia, Brazil
  • Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
  • Secretaria de Saúde do Estado de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
  • Hospital das Forças Armadas, Brasília, Distrito Federal, Brazil
  • Secretaria de Vigilância em Saúde/Ministério da Saúde, Brasília, Distrito Federal, Brazil
  • Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal
  • Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, NSW, Australia
  • KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa
  • Department of Zoology, Peter Medawar Building, University of Oxford, Oxford, UK
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41467-021-22607-0

    DOI

    http://dx.doi.org/10.1038/s41467-021-22607-0

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1137250193

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/33863880


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