Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2020-12-11

AUTHORS

Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt

ABSTRACT

New Zealand, a geographically remote Pacific island with easily sealable borders, implemented a nationwide ‘lockdown’ of all non-essential services to curb the spread of COVID-19. Here, we generate 649 SARS-CoV-2 genome sequences from infected patients in New Zealand with samples collected during the ‘first wave’, representing 56% of all confirmed cases in this time period. Despite its remoteness, the viruses imported into New Zealand represented nearly all of the genomic diversity sequenced from the global virus population. These data helped to quantify the effectiveness of public health interventions. For example, the effective reproductive number, Re of New Zealand’s largest cluster decreased from 7 to 0.2 within the first week of lockdown. Similarly, only 19% of virus introductions into New Zealand resulted in ongoing transmission of more than one additional case. Overall, these results demonstrate the utility of genomic pathogen surveillance to inform public health and disease mitigation. More... »

PAGES

6351

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/s41467-020-20235-8

DOI

http://dx.doi.org/10.1038/s41467-020-20235-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1133401565

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/33311501


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical and Health Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1117", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Public Health and Health Services", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Adolescent", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Adult", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Aged", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Aged, 80 and over", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "COVID-19", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Child", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Child, Preschool", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Female", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Geography", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Humans", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Infant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Infant, Newborn", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Male", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Middle Aged", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "New Zealand", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Pandemics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "SARS-CoV-2", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Whole Genome Sequencing", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Young Adult", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand", 
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Geoghegan", 
        "givenName": "Jemma L.", 
        "id": "sg:person.01205754601.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205754601.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ren", 
        "givenName": "Xiaoyun", 
        "id": "sg:person.0616107416.07", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0616107416.07"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Storey", 
        "givenName": "Matthew", 
        "id": "sg:person.015050612621.34", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015050612621.34"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Fred Hutchinson Cancer Research Centre, Seattle, WA, USA", 
          "id": "http://www.grid.ac/institutes/grid.270240.3", 
          "name": [
            "Fred Hutchinson Cancer Research Centre, Seattle, WA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hadfield", 
        "givenName": "James", 
        "id": "sg:person.011314417645.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011314417645.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jelley", 
        "givenName": "Lauren", 
        "id": "sg:person.015631431074.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015631431074.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jefferies", 
        "givenName": "Sarah", 
        "id": "sg:person.01361114403.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361114403.42"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sherwood", 
        "givenName": "Jill", 
        "id": "sg:person.015263737635.69", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015263737635.69"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Paine", 
        "givenName": "Shevaun", 
        "id": "sg:person.0774325366.13", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0774325366.13"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Huang", 
        "givenName": "Sue", 
        "id": "sg:person.01073717423.50", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073717423.50"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.9654.e", 
          "name": [
            "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Douglas", 
        "givenName": "Jordan", 
        "id": "sg:person.012065735413.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012065735413.46"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.9654.e", 
          "name": [
            "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mendes", 
        "givenName": "F\u00e1bio K.", 
        "id": "sg:person.01073014361.94", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073014361.94"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "McDonaldSporle Ltd., Auckland, New Zealand", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Department of Statistics, University of Auckland, Auckland, New Zealand", 
            "McDonaldSporle Ltd., Auckland, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sporle", 
        "givenName": "Andrew", 
        "id": "sg:person.0640000741.97", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0640000741.97"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Public Health, University of Otago, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.29980.3a", 
          "name": [
            "Department of Public Health, University of Otago, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Baker", 
        "givenName": "Michael G.", 
        "id": "sg:person.0736510555.07", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0736510555.07"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Pathology and Biomedical Science, University of Otago, Christchurch, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.29980.3a", 
          "name": [
            "Department of Pathology and Biomedical Science, University of Otago, Christchurch, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Murdoch", 
        "givenName": "David R.", 
        "id": "sg:person.0762124675.25", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0762124675.25"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "School of Veterinary Science, Massey University, Palmerston North, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.148374.d", 
          "name": [
            "School of Veterinary Science, Massey University, Palmerston North, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "French", 
        "givenName": "Nigel", 
        "id": "sg:person.01102135221.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01102135221.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Usher Institute, University of Edinburgh, Edinburgh, UK", 
          "id": "http://www.grid.ac/institutes/grid.4305.2", 
          "name": [
            "School of Health, Faculty of Health, Victoria University of Wellington, Wellington, New Zealand", 
            "Usher Institute, University of Edinburgh, Edinburgh, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Simpson", 
        "givenName": "Colin R.", 
        "id": "sg:person.01345537333.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01345537333.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.9654.e", 
          "name": [
            "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Welch", 
        "givenName": "David", 
        "id": "sg:person.01305535764.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01305535764.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.9654.e", 
          "name": [
            "Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Drummond", 
        "givenName": "Alexei J.", 
        "id": "sg:person.012156413402.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012156413402.23"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia", 
          "id": "http://www.grid.ac/institutes/grid.1013.3", 
          "name": [
            "Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Holmes", 
        "givenName": "Edward C.", 
        "id": "sg:person.012501436222.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012501436222.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia", 
          "id": "http://www.grid.ac/institutes/grid.1008.9", 
          "name": [
            "Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Duch\u00eane", 
        "givenName": "Sebasti\u00e1n", 
        "id": "sg:person.0625237752.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0625237752.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Environmental Science and Research, Wellington, New Zealand", 
          "id": "http://www.grid.ac/institutes/grid.419706.d", 
          "name": [
            "Institute of Environmental Science and Research, Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Ligt", 
        "givenName": "Joep", 
        "id": "sg:person.01041617543.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041617543.51"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1186/1471-2148-7-214", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010584451", 
          "https://doi.org/10.1186/1471-2148-7-214"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41467-020-18314-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1130469744", 
          "https://doi.org/10.1038/s41467-020-18314-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41467-020-19808-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1132931682", 
          "https://doi.org/10.1038/s41467-020-19808-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41591-020-0822-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1125753946", 
          "https://doi.org/10.1038/s41591-020-0822-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02101694", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039008589", 
          "https://doi.org/10.1007/bf02101694"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41586-020-2008-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1124545567", 
          "https://doi.org/10.1038/s41586-020-2008-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-018-1618-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1111266029", 
          "https://doi.org/10.1186/s13059-018-1618-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41591-020-0820-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1125686004", 
          "https://doi.org/10.1038/s41591-020-0820-9"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41564-020-0770-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1129354715", 
          "https://doi.org/10.1038/s41564-020-0770-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.4285", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1085213801", 
          "https://doi.org/10.1038/nmeth.4285"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41586-020-2012-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1124545162", 
          "https://doi.org/10.1038/s41586-020-2012-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41564-018-0296-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1110346428", 
          "https://doi.org/10.1038/s41564-018-0296-2"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41591-020-0869-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1126655280", 
          "https://doi.org/10.1038/s41591-020-0869-5"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2020-12-11", 
    "datePublishedReg": "2020-12-11", 
    "description": "New Zealand, a geographically remote Pacific island with easily sealable borders, implemented a nationwide \u2018lockdown\u2019 of all non-essential services to curb the spread of COVID-19. Here, we generate 649 SARS-CoV-2 genome sequences from infected patients in New Zealand with samples collected during the \u2018first wave\u2019, representing 56% of all confirmed cases in this time period. Despite its remoteness, the viruses imported into New Zealand represented nearly all of the genomic diversity sequenced from the global virus population. These data helped to quantify the effectiveness of public health interventions. For example, the effective reproductive number, Re of New Zealand\u2019s largest cluster decreased from 7 to 0.2 within the first week of lockdown. Similarly, only 19% of virus introductions into New Zealand resulted in ongoing transmission of more than one additional case. Overall, these results demonstrate the utility of genomic pathogen surveillance to inform public health and disease mitigation.", 
    "genre": "article", 
    "id": "sg:pub.10.1038/s41467-020-20235-8", 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1043282", 
        "issn": [
          "2041-1723"
        ], 
        "name": "Nature Communications", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "11"
      }
    ], 
    "keywords": [
      "public health interventions", 
      "SARS-CoV-2", 
      "effective reproductive number", 
      "infected patients", 
      "SARS-CoV-2 genome sequences", 
      "additional cases", 
      "health interventions", 
      "first week", 
      "ongoing transmission", 
      "genomic epidemiology", 
      "non-essential services", 
      "COVID-19", 
      "public health", 
      "reproductive number", 
      "transmission patterns", 
      "virus populations", 
      "virus introduction", 
      "first wave", 
      "disease mitigation", 
      "pathogen surveillance", 
      "patients", 
      "epidemiology", 
      "weeks", 
      "time period", 
      "New Zealand", 
      "intervention", 
      "lockdown", 
      "virus", 
      "remote Pacific islands", 
      "cases", 
      "surveillance", 
      "health", 
      "population", 
      "period", 
      "spread", 
      "genomic diversity", 
      "utility", 
      "Zealand", 
      "transmission", 
      "Pacific Islands", 
      "patterns", 
      "samples", 
      "large clusters", 
      "data", 
      "Aotearoa New Zealand", 
      "services", 
      "number", 
      "effectiveness", 
      "border", 
      "results", 
      "genome sequence", 
      "introduction", 
      "remoteness", 
      "sequence", 
      "clusters", 
      "diversity", 
      "waves", 
      "islands", 
      "example", 
      "dynamics", 
      "mitigation"
    ], 
    "name": "Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand", 
    "pagination": "6351", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1133401565"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/s41467-020-20235-8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "33311501"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/s41467-020-20235-8", 
      "https://app.dimensions.ai/details/publication/pub.1133401565"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-08-04T17:08", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_840.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/s41467-020-20235-8"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41467-020-20235-8'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41467-020-20235-8'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41467-020-20235-8'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41467-020-20235-8'


 

This table displays all metadata directly associated to this object as RDF triples.

430 TRIPLES      21 PREDICATES      121 URIs      100 LITERALS      29 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/s41467-020-20235-8 schema:about N01f81b1d50bd426db65d7514b79aef57
2 N0dcf9d8c7b23467993afd6e2519e3027
3 N113f98aa91334caa95f274faa296394a
4 N165d222325c94a1ba8a2c3803d2f4979
5 N1da5ba0c7cbf47b993b226fe698a21d8
6 N29a738d1f3ff4fdabc0829981fec9e9f
7 N3958d26e07734c34ad0c8b4652dae45f
8 N3f666fd4b0704c6582eeee5f87c68e6b
9 N3ff42af711674fd1a156139207cc8948
10 N60d934cd6d0145f88899b58f2ed0e90d
11 N65a07a66f3394c3f9a1d307640278af4
12 N699313bcf2fd4f348ed9ef449cfdb37e
13 N7574d5a18e0142a2a0a2ecca965da6d8
14 N8544e8c37d704a5a99db70d29cdc991a
15 Na6208e1bf45e4e60b494365adbd417ad
16 Nbfcdfa46330f4a90a0899f71ac84a707
17 Nc914c139e8b74df39e76120edecd60c6
18 Ncec81a38342640b99cca063577213b3b
19 Nf082a59c475e426c95f2ad7609f72c41
20 Nf7e35a69e91b4ed19fb19bee062660a9
21 Nfc7b4259c6484950ab2d74a132d26cc7
22 Nfd55b519c50b4b3cbd559eb901f80b2c
23 anzsrc-for:11
24 anzsrc-for:1117
25 schema:author Nea02b605625d4f559ff04db2aa391193
26 schema:citation sg:pub.10.1007/bf02101694
27 sg:pub.10.1038/nmeth.4285
28 sg:pub.10.1038/s41467-020-18314-x
29 sg:pub.10.1038/s41467-020-19808-4
30 sg:pub.10.1038/s41564-018-0296-2
31 sg:pub.10.1038/s41564-020-0770-5
32 sg:pub.10.1038/s41586-020-2008-3
33 sg:pub.10.1038/s41586-020-2012-7
34 sg:pub.10.1038/s41591-020-0820-9
35 sg:pub.10.1038/s41591-020-0822-7
36 sg:pub.10.1038/s41591-020-0869-5
37 sg:pub.10.1186/1471-2148-7-214
38 sg:pub.10.1186/s13059-018-1618-7
39 schema:datePublished 2020-12-11
40 schema:datePublishedReg 2020-12-11
41 schema:description New Zealand, a geographically remote Pacific island with easily sealable borders, implemented a nationwide ‘lockdown’ of all non-essential services to curb the spread of COVID-19. Here, we generate 649 SARS-CoV-2 genome sequences from infected patients in New Zealand with samples collected during the ‘first wave’, representing 56% of all confirmed cases in this time period. Despite its remoteness, the viruses imported into New Zealand represented nearly all of the genomic diversity sequenced from the global virus population. These data helped to quantify the effectiveness of public health interventions. For example, the effective reproductive number, Re of New Zealand’s largest cluster decreased from 7 to 0.2 within the first week of lockdown. Similarly, only 19% of virus introductions into New Zealand resulted in ongoing transmission of more than one additional case. Overall, these results demonstrate the utility of genomic pathogen surveillance to inform public health and disease mitigation.
42 schema:genre article
43 schema:isAccessibleForFree true
44 schema:isPartOf Naaee1319e6c34ad7ad5f15603739e24f
45 Nee0672dd665e4bb295bd261f0db2b97a
46 sg:journal.1043282
47 schema:keywords Aotearoa New Zealand
48 COVID-19
49 New Zealand
50 Pacific Islands
51 SARS-CoV-2
52 SARS-CoV-2 genome sequences
53 Zealand
54 additional cases
55 border
56 cases
57 clusters
58 data
59 disease mitigation
60 diversity
61 dynamics
62 effective reproductive number
63 effectiveness
64 epidemiology
65 example
66 first wave
67 first week
68 genome sequence
69 genomic diversity
70 genomic epidemiology
71 health
72 health interventions
73 infected patients
74 intervention
75 introduction
76 islands
77 large clusters
78 lockdown
79 mitigation
80 non-essential services
81 number
82 ongoing transmission
83 pathogen surveillance
84 patients
85 patterns
86 period
87 population
88 public health
89 public health interventions
90 remote Pacific islands
91 remoteness
92 reproductive number
93 results
94 samples
95 sequence
96 services
97 spread
98 surveillance
99 time period
100 transmission
101 transmission patterns
102 utility
103 virus
104 virus introduction
105 virus populations
106 waves
107 weeks
108 schema:name Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
109 schema:pagination 6351
110 schema:productId N0f75eb80708849bc95dba47ac2e32d94
111 N6b99634b4d8940b7bf7c3af62d2b4a58
112 Nd9b5d4f98a434bf1bb7ddadeccc1caaa
113 schema:sameAs https://app.dimensions.ai/details/publication/pub.1133401565
114 https://doi.org/10.1038/s41467-020-20235-8
115 schema:sdDatePublished 2022-08-04T17:08
116 schema:sdLicense https://scigraph.springernature.com/explorer/license/
117 schema:sdPublisher N86fdd3f4ccd7470d857d2572dbefdc4e
118 schema:url https://doi.org/10.1038/s41467-020-20235-8
119 sgo:license sg:explorer/license/
120 sgo:sdDataset articles
121 rdf:type schema:ScholarlyArticle
122 N01f81b1d50bd426db65d7514b79aef57 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
123 schema:name Aged
124 rdf:type schema:DefinedTerm
125 N0dcf9d8c7b23467993afd6e2519e3027 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
126 schema:name Genomics
127 rdf:type schema:DefinedTerm
128 N0f75eb80708849bc95dba47ac2e32d94 schema:name pubmed_id
129 schema:value 33311501
130 rdf:type schema:PropertyValue
131 N113f98aa91334caa95f274faa296394a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Female
133 rdf:type schema:DefinedTerm
134 N165d222325c94a1ba8a2c3803d2f4979 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
135 schema:name Geography
136 rdf:type schema:DefinedTerm
137 N1da5ba0c7cbf47b993b226fe698a21d8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
138 schema:name Male
139 rdf:type schema:DefinedTerm
140 N21f8da347f5b4a459dab063bb22c0d2b rdf:first sg:person.01041617543.51
141 rdf:rest rdf:nil
142 N29a738d1f3ff4fdabc0829981fec9e9f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
143 schema:name Infant
144 rdf:type schema:DefinedTerm
145 N384cb05b9f5b4c678930c0dd1ee0e78b rdf:first sg:person.0736510555.07
146 rdf:rest Nd374d6e9e2d3468a8cd6496d1673c503
147 N3958d26e07734c34ad0c8b4652dae45f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
148 schema:name New Zealand
149 rdf:type schema:DefinedTerm
150 N3f666fd4b0704c6582eeee5f87c68e6b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
151 schema:name Young Adult
152 rdf:type schema:DefinedTerm
153 N3ff42af711674fd1a156139207cc8948 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
154 schema:name COVID-19
155 rdf:type schema:DefinedTerm
156 N55c4ce87e8ad4cf7b4b308cf32e8194b rdf:first sg:person.015631431074.81
157 rdf:rest Na836b2b808f8479aa19ee21d04e2aa35
158 N5e0468cc17574cc2a5ed1a6e9e06faf4 rdf:first sg:person.012501436222.04
159 rdf:rest Naa220ba51d5e430aa117ef35ff87e372
160 N60d934cd6d0145f88899b58f2ed0e90d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
161 schema:name Genome, Viral
162 rdf:type schema:DefinedTerm
163 N65a07a66f3394c3f9a1d307640278af4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
164 schema:name Phylogeny
165 rdf:type schema:DefinedTerm
166 N699313bcf2fd4f348ed9ef449cfdb37e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
167 schema:name Adolescent
168 rdf:type schema:DefinedTerm
169 N6b99634b4d8940b7bf7c3af62d2b4a58 schema:name doi
170 schema:value 10.1038/s41467-020-20235-8
171 rdf:type schema:PropertyValue
172 N7574d5a18e0142a2a0a2ecca965da6d8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
173 schema:name Whole Genome Sequencing
174 rdf:type schema:DefinedTerm
175 N76a8bb59b1964938900027afd422f0d6 rdf:first sg:person.012065735413.46
176 rdf:rest N93d2c8be506b4e0c8e0952e6a17b3058
177 N8544e8c37d704a5a99db70d29cdc991a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
178 schema:name Infant, Newborn
179 rdf:type schema:DefinedTerm
180 N86fdd3f4ccd7470d857d2572dbefdc4e schema:name Springer Nature - SN SciGraph project
181 rdf:type schema:Organization
182 N93d2c8be506b4e0c8e0952e6a17b3058 rdf:first sg:person.01073014361.94
183 rdf:rest Nfe3f716e14e442cda3bf52f90755664c
184 Na6208e1bf45e4e60b494365adbd417ad schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
185 schema:name Child
186 rdf:type schema:DefinedTerm
187 Na836b2b808f8479aa19ee21d04e2aa35 rdf:first sg:person.01361114403.42
188 rdf:rest Nd3266c1f7c834324933806184a5daa6c
189 Naa220ba51d5e430aa117ef35ff87e372 rdf:first sg:person.0625237752.66
190 rdf:rest N21f8da347f5b4a459dab063bb22c0d2b
191 Naaee1319e6c34ad7ad5f15603739e24f schema:volumeNumber 11
192 rdf:type schema:PublicationVolume
193 Nb147dd4927a546b7817bd40881e9ba95 rdf:first sg:person.0774325366.13
194 rdf:rest Ne43cfdbd91fd47bb951f43a220ad8441
195 Nbe6773be5f504095b94c7f0f4af9014e rdf:first sg:person.0616107416.07
196 rdf:rest Nc283aec871df44859b71dbd37863dc06
197 Nbfcdfa46330f4a90a0899f71ac84a707 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
198 schema:name SARS-CoV-2
199 rdf:type schema:DefinedTerm
200 Nc0b6d1e1bc0243428c5264fdd3a50799 rdf:first sg:person.012156413402.23
201 rdf:rest N5e0468cc17574cc2a5ed1a6e9e06faf4
202 Nc283aec871df44859b71dbd37863dc06 rdf:first sg:person.015050612621.34
203 rdf:rest Nc834c9dbaed642c89ba2ac0434ebf264
204 Nc834c9dbaed642c89ba2ac0434ebf264 rdf:first sg:person.011314417645.68
205 rdf:rest N55c4ce87e8ad4cf7b4b308cf32e8194b
206 Nc914c139e8b74df39e76120edecd60c6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
207 schema:name Adult
208 rdf:type schema:DefinedTerm
209 Ncec81a38342640b99cca063577213b3b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
210 schema:name Humans
211 rdf:type schema:DefinedTerm
212 Nd3266c1f7c834324933806184a5daa6c rdf:first sg:person.015263737635.69
213 rdf:rest Nb147dd4927a546b7817bd40881e9ba95
214 Nd374d6e9e2d3468a8cd6496d1673c503 rdf:first sg:person.0762124675.25
215 rdf:rest Ned3191742ba84977b5df91264594d845
216 Nd9b5d4f98a434bf1bb7ddadeccc1caaa schema:name dimensions_id
217 schema:value pub.1133401565
218 rdf:type schema:PropertyValue
219 Ndca929a04d6e4cf7bee3a1657475967b rdf:first sg:person.01345537333.12
220 rdf:rest Nf776bbc9840e4299a4ded4580a6bbcda
221 Ne43cfdbd91fd47bb951f43a220ad8441 rdf:first sg:person.01073717423.50
222 rdf:rest N76a8bb59b1964938900027afd422f0d6
223 Nea02b605625d4f559ff04db2aa391193 rdf:first sg:person.01205754601.12
224 rdf:rest Nbe6773be5f504095b94c7f0f4af9014e
225 Ned3191742ba84977b5df91264594d845 rdf:first sg:person.01102135221.01
226 rdf:rest Ndca929a04d6e4cf7bee3a1657475967b
227 Nee0672dd665e4bb295bd261f0db2b97a schema:issueNumber 1
228 rdf:type schema:PublicationIssue
229 Nf082a59c475e426c95f2ad7609f72c41 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
230 schema:name Pandemics
231 rdf:type schema:DefinedTerm
232 Nf776bbc9840e4299a4ded4580a6bbcda rdf:first sg:person.01305535764.66
233 rdf:rest Nc0b6d1e1bc0243428c5264fdd3a50799
234 Nf7e35a69e91b4ed19fb19bee062660a9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
235 schema:name Aged, 80 and over
236 rdf:type schema:DefinedTerm
237 Nfc7b4259c6484950ab2d74a132d26cc7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
238 schema:name Middle Aged
239 rdf:type schema:DefinedTerm
240 Nfd55b519c50b4b3cbd559eb901f80b2c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
241 schema:name Child, Preschool
242 rdf:type schema:DefinedTerm
243 Nfe3f716e14e442cda3bf52f90755664c rdf:first sg:person.0640000741.97
244 rdf:rest N384cb05b9f5b4c678930c0dd1ee0e78b
245 anzsrc-for:11 schema:inDefinedTermSet anzsrc-for:
246 schema:name Medical and Health Sciences
247 rdf:type schema:DefinedTerm
248 anzsrc-for:1117 schema:inDefinedTermSet anzsrc-for:
249 schema:name Public Health and Health Services
250 rdf:type schema:DefinedTerm
251 sg:journal.1043282 schema:issn 2041-1723
252 schema:name Nature Communications
253 schema:publisher Springer Nature
254 rdf:type schema:Periodical
255 sg:person.01041617543.51 schema:affiliation grid-institutes:grid.419706.d
256 schema:familyName de Ligt
257 schema:givenName Joep
258 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041617543.51
259 rdf:type schema:Person
260 sg:person.01073014361.94 schema:affiliation grid-institutes:grid.9654.e
261 schema:familyName Mendes
262 schema:givenName Fábio K.
263 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073014361.94
264 rdf:type schema:Person
265 sg:person.01073717423.50 schema:affiliation grid-institutes:grid.419706.d
266 schema:familyName Huang
267 schema:givenName Sue
268 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073717423.50
269 rdf:type schema:Person
270 sg:person.01102135221.01 schema:affiliation grid-institutes:grid.148374.d
271 schema:familyName French
272 schema:givenName Nigel
273 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01102135221.01
274 rdf:type schema:Person
275 sg:person.011314417645.68 schema:affiliation grid-institutes:grid.270240.3
276 schema:familyName Hadfield
277 schema:givenName James
278 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011314417645.68
279 rdf:type schema:Person
280 sg:person.01205754601.12 schema:affiliation grid-institutes:grid.419706.d
281 schema:familyName Geoghegan
282 schema:givenName Jemma L.
283 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205754601.12
284 rdf:type schema:Person
285 sg:person.012065735413.46 schema:affiliation grid-institutes:grid.9654.e
286 schema:familyName Douglas
287 schema:givenName Jordan
288 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012065735413.46
289 rdf:type schema:Person
290 sg:person.012156413402.23 schema:affiliation grid-institutes:grid.9654.e
291 schema:familyName Drummond
292 schema:givenName Alexei J.
293 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012156413402.23
294 rdf:type schema:Person
295 sg:person.012501436222.04 schema:affiliation grid-institutes:grid.1013.3
296 schema:familyName Holmes
297 schema:givenName Edward C.
298 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012501436222.04
299 rdf:type schema:Person
300 sg:person.01305535764.66 schema:affiliation grid-institutes:grid.9654.e
301 schema:familyName Welch
302 schema:givenName David
303 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01305535764.66
304 rdf:type schema:Person
305 sg:person.01345537333.12 schema:affiliation grid-institutes:grid.4305.2
306 schema:familyName Simpson
307 schema:givenName Colin R.
308 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01345537333.12
309 rdf:type schema:Person
310 sg:person.01361114403.42 schema:affiliation grid-institutes:grid.419706.d
311 schema:familyName Jefferies
312 schema:givenName Sarah
313 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361114403.42
314 rdf:type schema:Person
315 sg:person.015050612621.34 schema:affiliation grid-institutes:grid.419706.d
316 schema:familyName Storey
317 schema:givenName Matthew
318 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015050612621.34
319 rdf:type schema:Person
320 sg:person.015263737635.69 schema:affiliation grid-institutes:grid.419706.d
321 schema:familyName Sherwood
322 schema:givenName Jill
323 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015263737635.69
324 rdf:type schema:Person
325 sg:person.015631431074.81 schema:affiliation grid-institutes:grid.419706.d
326 schema:familyName Jelley
327 schema:givenName Lauren
328 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015631431074.81
329 rdf:type schema:Person
330 sg:person.0616107416.07 schema:affiliation grid-institutes:grid.419706.d
331 schema:familyName Ren
332 schema:givenName Xiaoyun
333 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0616107416.07
334 rdf:type schema:Person
335 sg:person.0625237752.66 schema:affiliation grid-institutes:grid.1008.9
336 schema:familyName Duchêne
337 schema:givenName Sebastián
338 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0625237752.66
339 rdf:type schema:Person
340 sg:person.0640000741.97 schema:affiliation grid-institutes:None
341 schema:familyName Sporle
342 schema:givenName Andrew
343 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0640000741.97
344 rdf:type schema:Person
345 sg:person.0736510555.07 schema:affiliation grid-institutes:grid.29980.3a
346 schema:familyName Baker
347 schema:givenName Michael G.
348 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0736510555.07
349 rdf:type schema:Person
350 sg:person.0762124675.25 schema:affiliation grid-institutes:grid.29980.3a
351 schema:familyName Murdoch
352 schema:givenName David R.
353 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0762124675.25
354 rdf:type schema:Person
355 sg:person.0774325366.13 schema:affiliation grid-institutes:grid.419706.d
356 schema:familyName Paine
357 schema:givenName Shevaun
358 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0774325366.13
359 rdf:type schema:Person
360 sg:pub.10.1007/bf02101694 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039008589
361 https://doi.org/10.1007/bf02101694
362 rdf:type schema:CreativeWork
363 sg:pub.10.1038/nmeth.4285 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085213801
364 https://doi.org/10.1038/nmeth.4285
365 rdf:type schema:CreativeWork
366 sg:pub.10.1038/s41467-020-18314-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1130469744
367 https://doi.org/10.1038/s41467-020-18314-x
368 rdf:type schema:CreativeWork
369 sg:pub.10.1038/s41467-020-19808-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1132931682
370 https://doi.org/10.1038/s41467-020-19808-4
371 rdf:type schema:CreativeWork
372 sg:pub.10.1038/s41564-018-0296-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1110346428
373 https://doi.org/10.1038/s41564-018-0296-2
374 rdf:type schema:CreativeWork
375 sg:pub.10.1038/s41564-020-0770-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1129354715
376 https://doi.org/10.1038/s41564-020-0770-5
377 rdf:type schema:CreativeWork
378 sg:pub.10.1038/s41586-020-2008-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1124545567
379 https://doi.org/10.1038/s41586-020-2008-3
380 rdf:type schema:CreativeWork
381 sg:pub.10.1038/s41586-020-2012-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1124545162
382 https://doi.org/10.1038/s41586-020-2012-7
383 rdf:type schema:CreativeWork
384 sg:pub.10.1038/s41591-020-0820-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1125686004
385 https://doi.org/10.1038/s41591-020-0820-9
386 rdf:type schema:CreativeWork
387 sg:pub.10.1038/s41591-020-0822-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1125753946
388 https://doi.org/10.1038/s41591-020-0822-7
389 rdf:type schema:CreativeWork
390 sg:pub.10.1038/s41591-020-0869-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1126655280
391 https://doi.org/10.1038/s41591-020-0869-5
392 rdf:type schema:CreativeWork
393 sg:pub.10.1186/1471-2148-7-214 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010584451
394 https://doi.org/10.1186/1471-2148-7-214
395 rdf:type schema:CreativeWork
396 sg:pub.10.1186/s13059-018-1618-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1111266029
397 https://doi.org/10.1186/s13059-018-1618-7
398 rdf:type schema:CreativeWork
399 grid-institutes:None schema:alternateName McDonaldSporle Ltd., Auckland, New Zealand
400 schema:name Department of Statistics, University of Auckland, Auckland, New Zealand
401 McDonaldSporle Ltd., Auckland, New Zealand
402 rdf:type schema:Organization
403 grid-institutes:grid.1008.9 schema:alternateName Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia
404 schema:name Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia
405 rdf:type schema:Organization
406 grid-institutes:grid.1013.3 schema:alternateName Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia
407 schema:name Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia
408 rdf:type schema:Organization
409 grid-institutes:grid.148374.d schema:alternateName School of Veterinary Science, Massey University, Palmerston North, New Zealand
410 schema:name School of Veterinary Science, Massey University, Palmerston North, New Zealand
411 rdf:type schema:Organization
412 grid-institutes:grid.270240.3 schema:alternateName Fred Hutchinson Cancer Research Centre, Seattle, WA, USA
413 schema:name Fred Hutchinson Cancer Research Centre, Seattle, WA, USA
414 rdf:type schema:Organization
415 grid-institutes:grid.29980.3a schema:alternateName Department of Pathology and Biomedical Science, University of Otago, Christchurch, New Zealand
416 Department of Public Health, University of Otago, Wellington, New Zealand
417 schema:name Department of Pathology and Biomedical Science, University of Otago, Christchurch, New Zealand
418 Department of Public Health, University of Otago, Wellington, New Zealand
419 rdf:type schema:Organization
420 grid-institutes:grid.419706.d schema:alternateName Institute of Environmental Science and Research, Wellington, New Zealand
421 schema:name Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand
422 Institute of Environmental Science and Research, Wellington, New Zealand
423 rdf:type schema:Organization
424 grid-institutes:grid.4305.2 schema:alternateName Usher Institute, University of Edinburgh, Edinburgh, UK
425 schema:name School of Health, Faculty of Health, Victoria University of Wellington, Wellington, New Zealand
426 Usher Institute, University of Edinburgh, Edinburgh, UK
427 rdf:type schema:Organization
428 grid-institutes:grid.9654.e schema:alternateName Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand
429 schema:name Centre for Computational Evolution, School of Computer Science, University of Auckland, Auckland, New Zealand
430 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...