The structure and function of the global citrus rhizosphere microbiome View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-12

AUTHORS

Jin Xu, Yunzeng Zhang, Pengfan Zhang, Pankaj Trivedi, Nadia Riera, Yayu Wang, Xin Liu, Guangyi Fan, Jiliang Tang, Helvécio D. Coletta-Filho, Jaime Cubero, Xiaoling Deng, Veronica Ancona, Zhanjun Lu, Balian Zhong, M. Caroline Roper, Nieves Capote, Vittoria Catara, Gerhard Pietersen, Christian Vernière, Abdullah M. Al-Sadi, Lei Li, Fan Yang, Xun Xu, Jian Wang, Huanming Yang, Tao Jin, Nian Wang

ABSTRACT

Citrus is a globally important, perennial fruit crop whose rhizosphere microbiome is thought to play an important role in promoting citrus growth and health. Here, we report a comprehensive analysis of the structural and functional composition of the citrus rhizosphere microbiome. We use both amplicon and deep shotgun metagenomic sequencing of bulk soil and rhizosphere samples collected across distinct biogeographical regions from six continents. Predominant taxa include Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes. The core citrus rhizosphere microbiome comprises Pseudomonas, Agrobacterium, Cupriavidus, Bradyrhizobium, Rhizobium, Mesorhizobium, Burkholderia, Cellvibrio, Sphingomonas, Variovorax and Paraburkholderia, some of which are potential plant beneficial microbes. We also identify over-represented microbial functional traits mediating plant-microbe and microbe-microbe interactions, nutrition acquisition and plant growth promotion in citrus rhizosphere. The results provide valuable information to guide microbial isolation and culturing and, potentially, to harness the power of the microbiome to improve plant production and health. More... »

PAGES

4894

References to SciGraph publications

  • 2017-12. Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome in MICROBIOME
  • 2015-01. Fast and sensitive protein alignment using DIAMOND in NATURE METHODS
  • 2012-02. Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere in THE ISME JOURNAL
  • 2012-08. Defining the core Arabidopsis thaliana root microbiome in NATURE
  • 2018-05. Core microbiomes for sustainable agroecosystems in NATURE PLANTS
  • 2017-12. Normalization and microbial differential abundance strategies depend upon data characteristics in MICROBIOME
  • 2014-08. Taxonomical and functional microbial community selection in soybean rhizosphere in THE ISME JOURNAL
  • 2012-08. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota in NATURE
  • 2017-12. Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence in NATURE COMMUNICATIONS
  • 2012-07. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice in THE ISME JOURNAL
  • 2018-08. Structure and function of the global topsoil microbiome in NATURE
  • 2012-04. Fast gapped-read alignment with Bowtie 2 in NATURE METHODS
  • 2014-08. An integrated catalog of reference genes in the human gut microbiome in NATURE BIOTECHNOLOGY
  • 1990-04. The possible role of Yunnan, China, in the origin of contemporary citrus species (rutaceae) in ECONOMIC BOTANY
  • 2013-10. UPARSE: highly accurate OTU sequences from microbial amplicon reads in NATURE METHODS
  • 2018-02. Genomics of the origin and evolution of Citrus in NATURE
  • 2013-01. The draft genome of sweet orange (Citrus sinensis) in NATURE GENETICS
  • 2016-12. Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome in BMC GENOMICS
  • 2018-12. Microbial interactions within the plant holobiont in MICROBIOME
  • 2014-07. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication in NATURE BIOTECHNOLOGY
  • 2010-12. Prodigal: prokaryotic gene recognition and translation initiation site identification in BMC BIOINFORMATICS
  • 2011-02. UniFrac: an effective distance metric for microbial community comparison in THE ISME JOURNAL
  • 2016-08. Metagenome-wide association studies: fine-mining the microbiome in NATURE REVIEWS MICROBIOLOGY
  • 2017-10. Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits in THE ISME JOURNAL
  • 2015-12-02. Functional overlap of the Arabidopsis leaf and root microbiota in NATURE
  • 2018-01. Genomic features of bacterial adaptation to plants in NATURE GENETICS
  • 2014-12. Niche and host-associated functional signatures of the root surface microbiome in NATURE COMMUNICATIONS
  • 2017-05. Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction in NATURE GENETICS
  • 2018-12. Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality in MICROBIOME
  • 2016-12. Mash: fast genome and metagenome distance estimation using MinHash in GENOME BIOLOGY
  • 2018-12. Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota in NATURE COMMUNICATIONS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41467-018-07343-2

    DOI

    http://dx.doi.org/10.1038/s41467-018-07343-2

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1109946016

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30459421


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Microbiology", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "University of Florida", 
              "id": "https://www.grid.ac/institutes/grid.15276.37", 
              "name": [
                "Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA", 
                "Citrus Research and Education Center, Department of Plant Pathology, IFAS, University of Florida, 33885, Lake Alfred, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Xu", 
            "givenName": "Jin", 
            "id": "sg:person.01357766702.84", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357766702.84"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Yangzhou University", 
              "id": "https://www.grid.ac/institutes/grid.268415.c", 
              "name": [
                "Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA", 
                "College of Bioscience and Biotechnology, Yangzhou University, 225009, Yangzhou, Jiangsu, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Zhang", 
            "givenName": "Yunzeng", 
            "id": "sg:person.01200614211.51", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200614211.51"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Chinese Academy of Sciences", 
              "id": "https://www.grid.ac/institutes/grid.410726.6", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "BGI Education Center, University of Chinese Academy of Sciences, 518083, Shenzhen, Guangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Zhang", 
            "givenName": "Pengfan", 
            "id": "sg:person.010742711613.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010742711613.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Colorado State University", 
              "id": "https://www.grid.ac/institutes/grid.47894.36", 
              "name": [
                "Department of Bioagricultural Sciences and Pest Management, Colorado State University, 80523, Fort Collins, CO, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Trivedi", 
            "givenName": "Pankaj", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Florida", 
              "id": "https://www.grid.ac/institutes/grid.15276.37", 
              "name": [
                "Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Riera", 
            "givenName": "Nadia", 
            "id": "sg:person.01121333616.61", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01121333616.61"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wang", 
            "givenName": "Yayu", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "BGI-Qingdao, BGI-Shenzhen, 266510, Qingdao, Shangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Liu", 
            "givenName": "Xin", 
            "id": "sg:person.013217252727.69", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013217252727.69"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "BGI-Qingdao, BGI-Shenzhen, 266510, Qingdao, Shangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Fan", 
            "givenName": "Guangyi", 
            "id": "sg:person.01051741662.83", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01051741662.83"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Guangxi University", 
              "id": "https://www.grid.ac/institutes/grid.256609.e", 
              "name": [
                "Guangxi University, 530004, Nanning, Guangxi, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tang", 
            "givenName": "Jiliang", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Ag\u00eancia Paulista de Tecnologia dos Agroneg\u00f3cios", 
              "id": "https://www.grid.ac/institutes/grid.452491.f", 
              "name": [
                "Instituto Agron\u00f4mico, IAC Centro de Citricultura Sylvio Moreira, CCSM, 13490, Cordeir\u00f3polis, S\u00e3o Paulo, Brazil"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Coletta-Filho", 
            "givenName": "Helv\u00e9cio D.", 
            "id": "sg:person.0725032057.04", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0725032057.04"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria", 
              "id": "https://www.grid.ac/institutes/grid.419190.4", 
              "name": [
                "Dept. Plant Protection, Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA), 28040, Madrid, Spain"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Cubero", 
            "givenName": "Jaime", 
            "id": "sg:person.01123272652.61", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123272652.61"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "South China Agricultural University", 
              "id": "https://www.grid.ac/institutes/grid.20561.30", 
              "name": [
                "Department of Plant Pathology, South China Agricultural University, 510642, Guangzhou, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Deng", 
            "givenName": "Xiaoling", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "name": [
                "Texas A&M University-Kingsville Citrus Center, 78599, Weslaco, TX, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ancona", 
            "givenName": "Veronica", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Gannan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.464274.7", 
              "name": [
                "National Navel Orange Engineering Research Center, Gannan Normal University, 341000, Ganzhou, Jiangxi, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lu", 
            "givenName": "Zhanjun", 
            "id": "sg:person.011626632435.04", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011626632435.04"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Gannan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.464274.7", 
              "name": [
                "National Navel Orange Engineering Research Center, Gannan Normal University, 341000, Ganzhou, Jiangxi, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Zhong", 
            "givenName": "Balian", 
            "id": "sg:person.01204146535.99", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01204146535.99"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Riverside", 
              "id": "https://www.grid.ac/institutes/grid.266097.c", 
              "name": [
                "University of California, 92521, Riverside, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Roper", 
            "givenName": "M. Caroline", 
            "id": "sg:person.01300324521.22", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300324521.22"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "name": [
                "IFAPA Las Torres, 41200, Sevilla, Spain"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Capote", 
            "givenName": "Nieves", 
            "id": "sg:person.0622712345.76", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0622712345.76"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Catania", 
              "id": "https://www.grid.ac/institutes/grid.8158.4", 
              "name": [
                "Dipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Via Santa Sofia 100, 95123, Catania, Italy"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Catara", 
            "givenName": "Vittoria", 
            "id": "sg:person.0765315061.01", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0765315061.01"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Stellenbosch University", 
              "id": "https://www.grid.ac/institutes/grid.11956.3a", 
              "name": [
                "Department of Genetics, University of Stellenbosch, 7600, Stellenbsoch, South Africa"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pietersen", 
            "givenName": "Gerhard", 
            "id": "sg:person.0730406227.73", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0730406227.73"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Peuplement V\u00e9g\u00e9taux et Bio-agresseurs en Milieu Tropical", 
              "id": "https://www.grid.ac/institutes/grid.464055.6", 
              "name": [
                "CIRAD, UMR BGPI, F-34398, Montpellier, H\u00e9rault, France", 
                "CIRAD, UMR PVBMT, F-97410, St Pierre, La R\u00e9union, France"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Verni\u00e8re", 
            "givenName": "Christian", 
            "id": "sg:person.01362065462.52", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362065462.52"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Sultan Qaboos University", 
              "id": "https://www.grid.ac/institutes/grid.412846.d", 
              "name": [
                "Department of Crop Sciences, Sultan Qaboos University, 123, Muscat, Oman"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Al-Sadi", 
            "givenName": "Abdullah M.", 
            "id": "sg:person.014244666565.72", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014244666565.72"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Florida", 
              "id": "https://www.grid.ac/institutes/grid.15276.37", 
              "name": [
                "Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Li", 
            "givenName": "Lei", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Yang", 
            "givenName": "Fan", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "BGI-Qingdao, BGI-Shenzhen, 266510, Qingdao, Shangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Xu", 
            "givenName": "Xun", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wang", 
            "givenName": "Jian", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Yang", 
            "givenName": "Huanming", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Beijing Genomics Institute", 
              "id": "https://www.grid.ac/institutes/grid.21155.32", 
              "name": [
                "BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China", 
                "BGI-Qingdao, BGI-Shenzhen, 266510, Qingdao, Shangdong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Jin", 
            "givenName": "Tao", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Gannan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.464274.7", 
              "name": [
                "Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA", 
                "China-USA Citrus Huanglongbing Joint Laboratory (A joint laboratory of The University of Florida\u2019s Institute of Food and Agricultural Sciences and Gannan Normal University), National Navel Orange Engineering Research Center, Gannan Normal University, 341000, Ganzhou, Jiangxi, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wang", 
            "givenName": "Nian", 
            "id": "sg:person.01032557762.71", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032557762.71"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1016/j.chom.2015.01.011", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000950450"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-2958.2010.07279.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003819779"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-2958.2010.07279.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003819779"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature11237", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004217594", 
              "https://doi.org/10.1038/nature11237"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature11336", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004254071", 
              "https://doi.org/10.1038/nature11336"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2011.192", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004650973", 
              "https://doi.org/10.1038/ismej.2011.192"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s12864-016-2779-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005030961", 
              "https://doi.org/10.1186/s12864-016-2779-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s12864-016-2779-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005030961", 
              "https://doi.org/10.1186/s12864-016-2779-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt.2942", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006520065", 
              "https://doi.org/10.1038/nbt.2942"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.1923", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006541515", 
              "https://doi.org/10.1038/nmeth.1923"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/1751-7915.12592", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006960132"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1215210110", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006970837"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tim.2013.09.005", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007790363"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.05255-11", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012456869"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1110/ps.051857206", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013126819"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1110/ps.051857206", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013126819"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng.2472", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015014453", 
              "https://doi.org/10.1038/ng.2472"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btv033", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016356096"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btp336", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016441007"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ncomms5950", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016610218", 
              "https://doi.org/10.1038/ncomms5950"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gks1219", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017730157"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1508382112", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019477801"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1000080107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019627885"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2014.17", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019734012", 
              "https://doi.org/10.1038/ismej.2014.17"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1469-8137.2003.00700.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020340457"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1203980", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020956367"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1414592112", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021061472"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1099/mic.0.2008/022772-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023083547"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrmicro.2016.83", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023858855", 
              "https://doi.org/10.1038/nrmicro.2016.83"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.3176", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023901695", 
              "https://doi.org/10.1038/nmeth.3176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-11-119", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026423599", 
              "https://doi.org/10.1186/1471-2105-11-119"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bts565", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027022529"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.2604", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027743851", 
              "https://doi.org/10.1038/nmeth.2604"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2011.100", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028796101", 
              "https://doi.org/10.1038/ismej.2011.100"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt.2906", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029565933", 
              "https://doi.org/10.1038/nbt.2906"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1261359", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029773582"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/jb.00898-06", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030948381"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btr507", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031241489"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3389/fmicb.2014.00294", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033125859"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.5969107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034259503"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1402564111", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034733305"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1469-8137.2009.03160.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036037474"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1469-8137.2009.03160.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036037474"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/1462-2920.12452", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036338084"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3897/mycokeys.10.4852", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037069274"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02860491", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040685834", 
              "https://doi.org/10.1007/bf02860491"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02860491", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040685834", 
              "https://doi.org/10.1007/bf02860491"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2010.133", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042916034", 
              "https://doi.org/10.1038/ismej.2010.133"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.cell.2016.02.028", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044468199"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.cell.2016.02.028", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044468199"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature16192", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044646147", 
              "https://doi.org/10.1038/nature16192"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.00062-07", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045980007"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tplants.2016.01.013", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047406294"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s13059-016-0997-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050687712", 
              "https://doi.org/10.1186/s13059-016-0997-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s13059-016-0997-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050687712", 
              "https://doi.org/10.1186/s13059-016-0997-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1399-3054.2011.01508.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051138048"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.01708-16", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062710286"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1083188044", 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-017-0237-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084252802", 
              "https://doi.org/10.1186/s40168-017-0237-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-017-0237-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084252802", 
              "https://doi.org/10.1186/s40168-017-0237-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pbio.2001793", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084270053"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng.3839", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084771090", 
              "https://doi.org/10.1038/ng.3839"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng.3839", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084771090", 
              "https://doi.org/10.1038/ng.3839"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.cell.2017.04.025", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085129359"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.cell.2017.04.025", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085129359"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tplants.2017.04.008", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085573298"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2017.85", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085883910", 
              "https://doi.org/10.1038/ismej.2017.85"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.pbi.2017.04.018", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1086023058"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev-phyto-080516-035513", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1086119743"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/s41467-017-00262-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091025234", 
              "https://doi.org/10.1038/s41467-017-00262-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-017-0304-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091142610", 
              "https://doi.org/10.1186/s40168-017-0304-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-017-0304-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091142610", 
              "https://doi.org/10.1186/s40168-017-0304-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/gigascience/gix089", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091623591"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3389/fmicb.2017.02415", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1099614677"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/s41588-017-0012-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1099693132", 
              "https://doi.org/10.1038/s41588-017-0012-9"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/1462-2920.14031", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1099736332"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/1462-2920.14031", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1099736332"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-017-0391-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1100162893", 
              "https://doi.org/10.1186/s40168-017-0391-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.aap9516", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1100476550"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature25447", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1100859059", 
              "https://doi.org/10.1038/nature25447"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature25447", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1100859059", 
              "https://doi.org/10.1038/nature25447"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-018-0445-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1101771860", 
              "https://doi.org/10.1186/s40168-018-0445-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-018-0445-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1101771860", 
              "https://doi.org/10.1186/s40168-018-0445-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s40168-018-0445-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1101771860", 
              "https://doi.org/10.1186/s40168-018-0445-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2484763", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1102612753"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/s41477-018-0139-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1103680381", 
              "https://doi.org/10.1038/s41477-018-0139-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1800918115", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1105107890"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.chom.2018.06.006", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1105457499"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/s41467-018-05122-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1105513109", 
              "https://doi.org/10.1038/s41467-018-05122-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/s41586-018-0386-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1105928900", 
              "https://doi.org/10.1038/s41586-018-0386-6"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2018-12", 
        "datePublishedReg": "2018-12-01", 
        "description": "Citrus is a globally important, perennial fruit crop whose rhizosphere microbiome is thought to play an important role in promoting citrus growth and health. Here, we report a comprehensive analysis of the structural and functional composition of the citrus rhizosphere microbiome. We use both amplicon and deep shotgun metagenomic sequencing of bulk soil and rhizosphere samples collected across distinct biogeographical regions from six continents. Predominant taxa include Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes. The core citrus rhizosphere microbiome comprises Pseudomonas, Agrobacterium, Cupriavidus, Bradyrhizobium, Rhizobium, Mesorhizobium, Burkholderia, Cellvibrio, Sphingomonas, Variovorax and Paraburkholderia, some of which are potential plant beneficial microbes. We also identify over-represented microbial functional traits mediating plant-microbe and microbe-microbe interactions, nutrition acquisition and plant growth promotion in citrus rhizosphere. The results provide valuable information to guide microbial isolation and culturing and, potentially, to harness the power of the microbiome to improve plant production and health.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1038/s41467-018-07343-2", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isPartOf": [
          {
            "id": "sg:journal.1043282", 
            "issn": [
              "2041-1723"
            ], 
            "name": "Nature Communications", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "9"
          }
        ], 
        "name": "The structure and function of the global citrus rhizosphere microbiome", 
        "pagination": "4894", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "4fb5ae55ca6d2e227e5230cd7dcaf40bf7b49e2e789dc30011b635616b386fcf"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "30459421"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101528555"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1038/s41467-018-07343-2"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1109946016"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1038/s41467-018-07343-2", 
          "https://app.dimensions.ai/details/publication/pub.1109946016"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-11T08:11", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000269_0000000269/records_56821_00000000.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://www.nature.com/articles/s41467-018-07343-2"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41467-018-07343-2'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41467-018-07343-2'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41467-018-07343-2'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41467-018-07343-2'


     

    This table displays all metadata directly associated to this object as RDF triples.

    556 TRIPLES      21 PREDICATES      104 URIs      21 LITERALS      9 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1038/s41467-018-07343-2 schema:about anzsrc-for:06
    2 anzsrc-for:0605
    3 schema:author N82b2773ab0454268ab3fa364847e0705
    4 schema:citation sg:pub.10.1007/bf02860491
    5 sg:pub.10.1038/ismej.2010.133
    6 sg:pub.10.1038/ismej.2011.100
    7 sg:pub.10.1038/ismej.2011.192
    8 sg:pub.10.1038/ismej.2014.17
    9 sg:pub.10.1038/ismej.2017.85
    10 sg:pub.10.1038/nature11237
    11 sg:pub.10.1038/nature11336
    12 sg:pub.10.1038/nature16192
    13 sg:pub.10.1038/nature25447
    14 sg:pub.10.1038/nbt.2906
    15 sg:pub.10.1038/nbt.2942
    16 sg:pub.10.1038/ncomms5950
    17 sg:pub.10.1038/ng.2472
    18 sg:pub.10.1038/ng.3839
    19 sg:pub.10.1038/nmeth.1923
    20 sg:pub.10.1038/nmeth.2604
    21 sg:pub.10.1038/nmeth.3176
    22 sg:pub.10.1038/nrmicro.2016.83
    23 sg:pub.10.1038/s41467-017-00262-8
    24 sg:pub.10.1038/s41467-018-05122-7
    25 sg:pub.10.1038/s41477-018-0139-4
    26 sg:pub.10.1038/s41586-018-0386-6
    27 sg:pub.10.1038/s41588-017-0012-9
    28 sg:pub.10.1186/1471-2105-11-119
    29 sg:pub.10.1186/s12864-016-2779-y
    30 sg:pub.10.1186/s13059-016-0997-x
    31 sg:pub.10.1186/s40168-017-0237-y
    32 sg:pub.10.1186/s40168-017-0304-4
    33 sg:pub.10.1186/s40168-017-0391-2
    34 sg:pub.10.1186/s40168-018-0445-0
    35 https://app.dimensions.ai/details/publication/pub.1083188044
    36 https://doi.org/10.1016/j.cell.2016.02.028
    37 https://doi.org/10.1016/j.cell.2017.04.025
    38 https://doi.org/10.1016/j.chom.2015.01.011
    39 https://doi.org/10.1016/j.chom.2018.06.006
    40 https://doi.org/10.1016/j.pbi.2017.04.018
    41 https://doi.org/10.1016/j.tim.2013.09.005
    42 https://doi.org/10.1016/j.tplants.2016.01.013
    43 https://doi.org/10.1016/j.tplants.2017.04.008
    44 https://doi.org/10.1046/j.1469-8137.2003.00700.x
    45 https://doi.org/10.1073/pnas.1000080107
    46 https://doi.org/10.1073/pnas.1215210110
    47 https://doi.org/10.1073/pnas.1402564111
    48 https://doi.org/10.1073/pnas.1414592112
    49 https://doi.org/10.1073/pnas.1508382112
    50 https://doi.org/10.1073/pnas.1800918115
    51 https://doi.org/10.1093/bioinformatics/btp336
    52 https://doi.org/10.1093/bioinformatics/btr507
    53 https://doi.org/10.1093/bioinformatics/bts565
    54 https://doi.org/10.1093/bioinformatics/btv033
    55 https://doi.org/10.1093/gigascience/gix089
    56 https://doi.org/10.1093/nar/gks1219
    57 https://doi.org/10.1099/mic.0.2008/022772-0
    58 https://doi.org/10.1101/gr.5969107
    59 https://doi.org/10.1110/ps.051857206
    60 https://doi.org/10.1111/1462-2920.12452
    61 https://doi.org/10.1111/1462-2920.14031
    62 https://doi.org/10.1111/1751-7915.12592
    63 https://doi.org/10.1111/j.1365-2958.2010.07279.x
    64 https://doi.org/10.1111/j.1399-3054.2011.01508.x
    65 https://doi.org/10.1111/j.1469-8137.2009.03160.x
    66 https://doi.org/10.1126/science.1203980
    67 https://doi.org/10.1126/science.1261359
    68 https://doi.org/10.1126/science.aap9516
    69 https://doi.org/10.1128/aem.00062-07
    70 https://doi.org/10.1128/aem.01708-16
    71 https://doi.org/10.1128/aem.05255-11
    72 https://doi.org/10.1128/jb.00898-06
    73 https://doi.org/10.1146/annurev-phyto-080516-035513
    74 https://doi.org/10.1371/journal.pbio.2001793
    75 https://doi.org/10.2307/2484763
    76 https://doi.org/10.3389/fmicb.2014.00294
    77 https://doi.org/10.3389/fmicb.2017.02415
    78 https://doi.org/10.3897/mycokeys.10.4852
    79 schema:datePublished 2018-12
    80 schema:datePublishedReg 2018-12-01
    81 schema:description Citrus is a globally important, perennial fruit crop whose rhizosphere microbiome is thought to play an important role in promoting citrus growth and health. Here, we report a comprehensive analysis of the structural and functional composition of the citrus rhizosphere microbiome. We use both amplicon and deep shotgun metagenomic sequencing of bulk soil and rhizosphere samples collected across distinct biogeographical regions from six continents. Predominant taxa include Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes. The core citrus rhizosphere microbiome comprises Pseudomonas, Agrobacterium, Cupriavidus, Bradyrhizobium, Rhizobium, Mesorhizobium, Burkholderia, Cellvibrio, Sphingomonas, Variovorax and Paraburkholderia, some of which are potential plant beneficial microbes. We also identify over-represented microbial functional traits mediating plant-microbe and microbe-microbe interactions, nutrition acquisition and plant growth promotion in citrus rhizosphere. The results provide valuable information to guide microbial isolation and culturing and, potentially, to harness the power of the microbiome to improve plant production and health.
    82 schema:genre research_article
    83 schema:inLanguage en
    84 schema:isAccessibleForFree true
    85 schema:isPartOf Na52f6d817a59445c81c05ab4f935b8a1
    86 Nb99a480799e348718a72f5d0cebe4679
    87 sg:journal.1043282
    88 schema:name The structure and function of the global citrus rhizosphere microbiome
    89 schema:pagination 4894
    90 schema:productId N11c37f52f5c3429287b0b57f6be26044
    91 N28e8453dbc4444c198775ff7eea5ce9c
    92 N9b196fec936f47aba11cbc07e7ead2c1
    93 Nca3529a954624ecf870fdfe7a45aa4e4
    94 Nd589846363c84d9eba671183e747c4fd
    95 schema:sameAs https://app.dimensions.ai/details/publication/pub.1109946016
    96 https://doi.org/10.1038/s41467-018-07343-2
    97 schema:sdDatePublished 2019-04-11T08:11
    98 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    99 schema:sdPublisher N680d0429fc22481ba4f5d11a94d193ea
    100 schema:url https://www.nature.com/articles/s41467-018-07343-2
    101 sgo:license sg:explorer/license/
    102 sgo:sdDataset articles
    103 rdf:type schema:ScholarlyArticle
    104 N066ec467b1b244178b52a7564921bd57 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    105 schema:familyName Yang
    106 schema:givenName Fan
    107 rdf:type schema:Person
    108 N08e828fc34b34963aa17f260c9fd16e6 rdf:first sg:person.01051741662.83
    109 rdf:rest Nd11daabaeef74686be034b6727a2deeb
    110 N0ed05687d7f34b81b2837cc4f3af1683 rdf:first Nf85d26b63e5742e7a0fbe9a5a415449d
    111 rdf:rest Ndea00466f9424f7fbe9df1217427df0e
    112 N11c37f52f5c3429287b0b57f6be26044 schema:name pubmed_id
    113 schema:value 30459421
    114 rdf:type schema:PropertyValue
    115 N16ed174923974d709419fa9428841862 rdf:first N3e1822ae78f34413bf7d5381e94cbde7
    116 rdf:rest Nd43a406cb0264d5a8c19f8e6ffbd4a06
    117 N28e8453dbc4444c198775ff7eea5ce9c schema:name nlm_unique_id
    118 schema:value 101528555
    119 rdf:type schema:PropertyValue
    120 N2a48b72b03ce4ecaa193e50cafc0dc2c rdf:first Naa0bcdcdd11f43c18dac3cf027378885
    121 rdf:rest N2b2706ab7f3a40e2924474f25786f528
    122 N2b2706ab7f3a40e2924474f25786f528 rdf:first Na3a0fd96a0be4d83b4cbdf29e31b9f90
    123 rdf:rest Nf1813e91bab34e8f9aacddd394af319e
    124 N2b53a82db7d74e728295181389da3901 rdf:first Ncb07c1de4d1749269be6e13423b0fa90
    125 rdf:rest N16ed174923974d709419fa9428841862
    126 N311ce0ae83f84a33b4ad7748d74e8ccd rdf:first sg:person.0622712345.76
    127 rdf:rest Na0431d37f05044e197bfa207e39af34e
    128 N360d549a822b427dac5c8b0391f07ace rdf:first sg:person.0730406227.73
    129 rdf:rest N723b31759bbb419582ecf3ab7932a9a8
    130 N3e1822ae78f34413bf7d5381e94cbde7 schema:affiliation N4c72f863715e43f5a857da6cd4b02b03
    131 schema:familyName Ancona
    132 schema:givenName Veronica
    133 rdf:type schema:Person
    134 N4c72f863715e43f5a857da6cd4b02b03 schema:name Texas A&M University-Kingsville Citrus Center, 78599, Weslaco, TX, USA
    135 rdf:type schema:Organization
    136 N540a4060c97743efaaef9ed46fd4b701 rdf:first sg:person.010742711613.14
    137 rdf:rest N7409c42a70c34c1187d133b779b5eae4
    138 N541d53c4b3794c1e8d6ac648d43882a9 rdf:first sg:person.01032557762.71
    139 rdf:rest rdf:nil
    140 N59d20c5f772941de9818db36dae0b946 rdf:first sg:person.0725032057.04
    141 rdf:rest Ne6c5a8135c9f4356baa7aeb3ae4bd20e
    142 N680d0429fc22481ba4f5d11a94d193ea schema:name Springer Nature - SN SciGraph project
    143 rdf:type schema:Organization
    144 N723b31759bbb419582ecf3ab7932a9a8 rdf:first sg:person.01362065462.52
    145 rdf:rest Na6ce34ac57504facbb7c32ae5401f176
    146 N72d6e875d33342b1a2793c0389c334c2 schema:affiliation https://www.grid.ac/institutes/grid.15276.37
    147 schema:familyName Li
    148 schema:givenName Lei
    149 rdf:type schema:Person
    150 N7409c42a70c34c1187d133b779b5eae4 rdf:first N8d8dd10e5b794df296bd2c85ee9bf128
    151 rdf:rest Ned7ec24c69234ed1bcf28ab3145c8827
    152 N7a0d37a45cc943ee8fe873173a872217 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    153 schema:familyName Jin
    154 schema:givenName Tao
    155 rdf:type schema:Person
    156 N82b2773ab0454268ab3fa364847e0705 rdf:first sg:person.01357766702.84
    157 rdf:rest Ne35a693bcec340828291e1adf8637f1b
    158 N855d7e07cc7d4ea0bec2f8e360793916 rdf:first N066ec467b1b244178b52a7564921bd57
    159 rdf:rest N8ff927dda29c461e9065890f1d7048a1
    160 N8d8dd10e5b794df296bd2c85ee9bf128 schema:affiliation https://www.grid.ac/institutes/grid.47894.36
    161 schema:familyName Trivedi
    162 schema:givenName Pankaj
    163 rdf:type schema:Person
    164 N8ff927dda29c461e9065890f1d7048a1 rdf:first Nd2f7fc602d584946a4324fef64bf6584
    165 rdf:rest N2a48b72b03ce4ecaa193e50cafc0dc2c
    166 N913398bb3acc41548b4c354c1c457353 rdf:first sg:person.01300324521.22
    167 rdf:rest N311ce0ae83f84a33b4ad7748d74e8ccd
    168 N9b196fec936f47aba11cbc07e7ead2c1 schema:name dimensions_id
    169 schema:value pub.1109946016
    170 rdf:type schema:PropertyValue
    171 Na0431d37f05044e197bfa207e39af34e rdf:first sg:person.0765315061.01
    172 rdf:rest N360d549a822b427dac5c8b0391f07ace
    173 Na341128aada94eaea024676617308b5d schema:affiliation https://www.grid.ac/institutes/grid.256609.e
    174 schema:familyName Tang
    175 schema:givenName Jiliang
    176 rdf:type schema:Person
    177 Na3a0fd96a0be4d83b4cbdf29e31b9f90 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    178 schema:familyName Yang
    179 schema:givenName Huanming
    180 rdf:type schema:Person
    181 Na52f6d817a59445c81c05ab4f935b8a1 schema:volumeNumber 9
    182 rdf:type schema:PublicationVolume
    183 Na6ce34ac57504facbb7c32ae5401f176 rdf:first sg:person.014244666565.72
    184 rdf:rest Nfe36cd0247a7410e9e6a4dde00d8739b
    185 Naa0bcdcdd11f43c18dac3cf027378885 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    186 schema:familyName Wang
    187 schema:givenName Jian
    188 rdf:type schema:Person
    189 Nb99a480799e348718a72f5d0cebe4679 schema:issueNumber 1
    190 rdf:type schema:PublicationIssue
    191 Nca3529a954624ecf870fdfe7a45aa4e4 schema:name doi
    192 schema:value 10.1038/s41467-018-07343-2
    193 rdf:type schema:PropertyValue
    194 Ncb07c1de4d1749269be6e13423b0fa90 schema:affiliation https://www.grid.ac/institutes/grid.20561.30
    195 schema:familyName Deng
    196 schema:givenName Xiaoling
    197 rdf:type schema:Person
    198 Nd11daabaeef74686be034b6727a2deeb rdf:first Na341128aada94eaea024676617308b5d
    199 rdf:rest N59d20c5f772941de9818db36dae0b946
    200 Nd2f7fc602d584946a4324fef64bf6584 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    201 schema:familyName Xu
    202 schema:givenName Xun
    203 rdf:type schema:Person
    204 Nd43a406cb0264d5a8c19f8e6ffbd4a06 rdf:first sg:person.011626632435.04
    205 rdf:rest Nf8bcf7b3dda34ef9b6376ac087a6fb2d
    206 Nd589846363c84d9eba671183e747c4fd schema:name readcube_id
    207 schema:value 4fb5ae55ca6d2e227e5230cd7dcaf40bf7b49e2e789dc30011b635616b386fcf
    208 rdf:type schema:PropertyValue
    209 Nd79f29d4a34e4c289bf305b11b98927a schema:name IFAPA Las Torres, 41200, Sevilla, Spain
    210 rdf:type schema:Organization
    211 Ndea00466f9424f7fbe9df1217427df0e rdf:first sg:person.013217252727.69
    212 rdf:rest N08e828fc34b34963aa17f260c9fd16e6
    213 Ne35a693bcec340828291e1adf8637f1b rdf:first sg:person.01200614211.51
    214 rdf:rest N540a4060c97743efaaef9ed46fd4b701
    215 Ne6c5a8135c9f4356baa7aeb3ae4bd20e rdf:first sg:person.01123272652.61
    216 rdf:rest N2b53a82db7d74e728295181389da3901
    217 Ned7ec24c69234ed1bcf28ab3145c8827 rdf:first sg:person.01121333616.61
    218 rdf:rest N0ed05687d7f34b81b2837cc4f3af1683
    219 Nf1813e91bab34e8f9aacddd394af319e rdf:first N7a0d37a45cc943ee8fe873173a872217
    220 rdf:rest N541d53c4b3794c1e8d6ac648d43882a9
    221 Nf85d26b63e5742e7a0fbe9a5a415449d schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    222 schema:familyName Wang
    223 schema:givenName Yayu
    224 rdf:type schema:Person
    225 Nf8bcf7b3dda34ef9b6376ac087a6fb2d rdf:first sg:person.01204146535.99
    226 rdf:rest N913398bb3acc41548b4c354c1c457353
    227 Nfe36cd0247a7410e9e6a4dde00d8739b rdf:first N72d6e875d33342b1a2793c0389c334c2
    228 rdf:rest N855d7e07cc7d4ea0bec2f8e360793916
    229 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    230 schema:name Biological Sciences
    231 rdf:type schema:DefinedTerm
    232 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
    233 schema:name Microbiology
    234 rdf:type schema:DefinedTerm
    235 sg:journal.1043282 schema:issn 2041-1723
    236 schema:name Nature Communications
    237 rdf:type schema:Periodical
    238 sg:person.01032557762.71 schema:affiliation https://www.grid.ac/institutes/grid.464274.7
    239 schema:familyName Wang
    240 schema:givenName Nian
    241 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032557762.71
    242 rdf:type schema:Person
    243 sg:person.01051741662.83 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    244 schema:familyName Fan
    245 schema:givenName Guangyi
    246 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01051741662.83
    247 rdf:type schema:Person
    248 sg:person.010742711613.14 schema:affiliation https://www.grid.ac/institutes/grid.410726.6
    249 schema:familyName Zhang
    250 schema:givenName Pengfan
    251 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010742711613.14
    252 rdf:type schema:Person
    253 sg:person.01121333616.61 schema:affiliation https://www.grid.ac/institutes/grid.15276.37
    254 schema:familyName Riera
    255 schema:givenName Nadia
    256 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01121333616.61
    257 rdf:type schema:Person
    258 sg:person.01123272652.61 schema:affiliation https://www.grid.ac/institutes/grid.419190.4
    259 schema:familyName Cubero
    260 schema:givenName Jaime
    261 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123272652.61
    262 rdf:type schema:Person
    263 sg:person.011626632435.04 schema:affiliation https://www.grid.ac/institutes/grid.464274.7
    264 schema:familyName Lu
    265 schema:givenName Zhanjun
    266 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011626632435.04
    267 rdf:type schema:Person
    268 sg:person.01200614211.51 schema:affiliation https://www.grid.ac/institutes/grid.268415.c
    269 schema:familyName Zhang
    270 schema:givenName Yunzeng
    271 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200614211.51
    272 rdf:type schema:Person
    273 sg:person.01204146535.99 schema:affiliation https://www.grid.ac/institutes/grid.464274.7
    274 schema:familyName Zhong
    275 schema:givenName Balian
    276 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01204146535.99
    277 rdf:type schema:Person
    278 sg:person.01300324521.22 schema:affiliation https://www.grid.ac/institutes/grid.266097.c
    279 schema:familyName Roper
    280 schema:givenName M. Caroline
    281 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300324521.22
    282 rdf:type schema:Person
    283 sg:person.013217252727.69 schema:affiliation https://www.grid.ac/institutes/grid.21155.32
    284 schema:familyName Liu
    285 schema:givenName Xin
    286 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013217252727.69
    287 rdf:type schema:Person
    288 sg:person.01357766702.84 schema:affiliation https://www.grid.ac/institutes/grid.15276.37
    289 schema:familyName Xu
    290 schema:givenName Jin
    291 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357766702.84
    292 rdf:type schema:Person
    293 sg:person.01362065462.52 schema:affiliation https://www.grid.ac/institutes/grid.464055.6
    294 schema:familyName Vernière
    295 schema:givenName Christian
    296 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362065462.52
    297 rdf:type schema:Person
    298 sg:person.014244666565.72 schema:affiliation https://www.grid.ac/institutes/grid.412846.d
    299 schema:familyName Al-Sadi
    300 schema:givenName Abdullah M.
    301 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014244666565.72
    302 rdf:type schema:Person
    303 sg:person.0622712345.76 schema:affiliation Nd79f29d4a34e4c289bf305b11b98927a
    304 schema:familyName Capote
    305 schema:givenName Nieves
    306 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0622712345.76
    307 rdf:type schema:Person
    308 sg:person.0725032057.04 schema:affiliation https://www.grid.ac/institutes/grid.452491.f
    309 schema:familyName Coletta-Filho
    310 schema:givenName Helvécio D.
    311 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0725032057.04
    312 rdf:type schema:Person
    313 sg:person.0730406227.73 schema:affiliation https://www.grid.ac/institutes/grid.11956.3a
    314 schema:familyName Pietersen
    315 schema:givenName Gerhard
    316 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0730406227.73
    317 rdf:type schema:Person
    318 sg:person.0765315061.01 schema:affiliation https://www.grid.ac/institutes/grid.8158.4
    319 schema:familyName Catara
    320 schema:givenName Vittoria
    321 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0765315061.01
    322 rdf:type schema:Person
    323 sg:pub.10.1007/bf02860491 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040685834
    324 https://doi.org/10.1007/bf02860491
    325 rdf:type schema:CreativeWork
    326 sg:pub.10.1038/ismej.2010.133 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042916034
    327 https://doi.org/10.1038/ismej.2010.133
    328 rdf:type schema:CreativeWork
    329 sg:pub.10.1038/ismej.2011.100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028796101
    330 https://doi.org/10.1038/ismej.2011.100
    331 rdf:type schema:CreativeWork
    332 sg:pub.10.1038/ismej.2011.192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004650973
    333 https://doi.org/10.1038/ismej.2011.192
    334 rdf:type schema:CreativeWork
    335 sg:pub.10.1038/ismej.2014.17 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019734012
    336 https://doi.org/10.1038/ismej.2014.17
    337 rdf:type schema:CreativeWork
    338 sg:pub.10.1038/ismej.2017.85 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085883910
    339 https://doi.org/10.1038/ismej.2017.85
    340 rdf:type schema:CreativeWork
    341 sg:pub.10.1038/nature11237 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004217594
    342 https://doi.org/10.1038/nature11237
    343 rdf:type schema:CreativeWork
    344 sg:pub.10.1038/nature11336 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004254071
    345 https://doi.org/10.1038/nature11336
    346 rdf:type schema:CreativeWork
    347 sg:pub.10.1038/nature16192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044646147
    348 https://doi.org/10.1038/nature16192
    349 rdf:type schema:CreativeWork
    350 sg:pub.10.1038/nature25447 schema:sameAs https://app.dimensions.ai/details/publication/pub.1100859059
    351 https://doi.org/10.1038/nature25447
    352 rdf:type schema:CreativeWork
    353 sg:pub.10.1038/nbt.2906 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029565933
    354 https://doi.org/10.1038/nbt.2906
    355 rdf:type schema:CreativeWork
    356 sg:pub.10.1038/nbt.2942 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006520065
    357 https://doi.org/10.1038/nbt.2942
    358 rdf:type schema:CreativeWork
    359 sg:pub.10.1038/ncomms5950 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016610218
    360 https://doi.org/10.1038/ncomms5950
    361 rdf:type schema:CreativeWork
    362 sg:pub.10.1038/ng.2472 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015014453
    363 https://doi.org/10.1038/ng.2472
    364 rdf:type schema:CreativeWork
    365 sg:pub.10.1038/ng.3839 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084771090
    366 https://doi.org/10.1038/ng.3839
    367 rdf:type schema:CreativeWork
    368 sg:pub.10.1038/nmeth.1923 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006541515
    369 https://doi.org/10.1038/nmeth.1923
    370 rdf:type schema:CreativeWork
    371 sg:pub.10.1038/nmeth.2604 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027743851
    372 https://doi.org/10.1038/nmeth.2604
    373 rdf:type schema:CreativeWork
    374 sg:pub.10.1038/nmeth.3176 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023901695
    375 https://doi.org/10.1038/nmeth.3176
    376 rdf:type schema:CreativeWork
    377 sg:pub.10.1038/nrmicro.2016.83 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023858855
    378 https://doi.org/10.1038/nrmicro.2016.83
    379 rdf:type schema:CreativeWork
    380 sg:pub.10.1038/s41467-017-00262-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091025234
    381 https://doi.org/10.1038/s41467-017-00262-8
    382 rdf:type schema:CreativeWork
    383 sg:pub.10.1038/s41467-018-05122-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1105513109
    384 https://doi.org/10.1038/s41467-018-05122-7
    385 rdf:type schema:CreativeWork
    386 sg:pub.10.1038/s41477-018-0139-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1103680381
    387 https://doi.org/10.1038/s41477-018-0139-4
    388 rdf:type schema:CreativeWork
    389 sg:pub.10.1038/s41586-018-0386-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1105928900
    390 https://doi.org/10.1038/s41586-018-0386-6
    391 rdf:type schema:CreativeWork
    392 sg:pub.10.1038/s41588-017-0012-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099693132
    393 https://doi.org/10.1038/s41588-017-0012-9
    394 rdf:type schema:CreativeWork
    395 sg:pub.10.1186/1471-2105-11-119 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026423599
    396 https://doi.org/10.1186/1471-2105-11-119
    397 rdf:type schema:CreativeWork
    398 sg:pub.10.1186/s12864-016-2779-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1005030961
    399 https://doi.org/10.1186/s12864-016-2779-y
    400 rdf:type schema:CreativeWork
    401 sg:pub.10.1186/s13059-016-0997-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1050687712
    402 https://doi.org/10.1186/s13059-016-0997-x
    403 rdf:type schema:CreativeWork
    404 sg:pub.10.1186/s40168-017-0237-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1084252802
    405 https://doi.org/10.1186/s40168-017-0237-y
    406 rdf:type schema:CreativeWork
    407 sg:pub.10.1186/s40168-017-0304-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091142610
    408 https://doi.org/10.1186/s40168-017-0304-4
    409 rdf:type schema:CreativeWork
    410 sg:pub.10.1186/s40168-017-0391-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1100162893
    411 https://doi.org/10.1186/s40168-017-0391-2
    412 rdf:type schema:CreativeWork
    413 sg:pub.10.1186/s40168-018-0445-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1101771860
    414 https://doi.org/10.1186/s40168-018-0445-0
    415 rdf:type schema:CreativeWork
    416 https://app.dimensions.ai/details/publication/pub.1083188044 schema:CreativeWork
    417 https://doi.org/10.1016/j.cell.2016.02.028 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044468199
    418 rdf:type schema:CreativeWork
    419 https://doi.org/10.1016/j.cell.2017.04.025 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085129359
    420 rdf:type schema:CreativeWork
    421 https://doi.org/10.1016/j.chom.2015.01.011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000950450
    422 rdf:type schema:CreativeWork
    423 https://doi.org/10.1016/j.chom.2018.06.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1105457499
    424 rdf:type schema:CreativeWork
    425 https://doi.org/10.1016/j.pbi.2017.04.018 schema:sameAs https://app.dimensions.ai/details/publication/pub.1086023058
    426 rdf:type schema:CreativeWork
    427 https://doi.org/10.1016/j.tim.2013.09.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007790363
    428 rdf:type schema:CreativeWork
    429 https://doi.org/10.1016/j.tplants.2016.01.013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047406294
    430 rdf:type schema:CreativeWork
    431 https://doi.org/10.1016/j.tplants.2017.04.008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085573298
    432 rdf:type schema:CreativeWork
    433 https://doi.org/10.1046/j.1469-8137.2003.00700.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1020340457
    434 rdf:type schema:CreativeWork
    435 https://doi.org/10.1073/pnas.1000080107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019627885
    436 rdf:type schema:CreativeWork
    437 https://doi.org/10.1073/pnas.1215210110 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006970837
    438 rdf:type schema:CreativeWork
    439 https://doi.org/10.1073/pnas.1402564111 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034733305
    440 rdf:type schema:CreativeWork
    441 https://doi.org/10.1073/pnas.1414592112 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021061472
    442 rdf:type schema:CreativeWork
    443 https://doi.org/10.1073/pnas.1508382112 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019477801
    444 rdf:type schema:CreativeWork
    445 https://doi.org/10.1073/pnas.1800918115 schema:sameAs https://app.dimensions.ai/details/publication/pub.1105107890
    446 rdf:type schema:CreativeWork
    447 https://doi.org/10.1093/bioinformatics/btp336 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016441007
    448 rdf:type schema:CreativeWork
    449 https://doi.org/10.1093/bioinformatics/btr507 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031241489
    450 rdf:type schema:CreativeWork
    451 https://doi.org/10.1093/bioinformatics/bts565 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027022529
    452 rdf:type schema:CreativeWork
    453 https://doi.org/10.1093/bioinformatics/btv033 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016356096
    454 rdf:type schema:CreativeWork
    455 https://doi.org/10.1093/gigascience/gix089 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091623591
    456 rdf:type schema:CreativeWork
    457 https://doi.org/10.1093/nar/gks1219 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017730157
    458 rdf:type schema:CreativeWork
    459 https://doi.org/10.1099/mic.0.2008/022772-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023083547
    460 rdf:type schema:CreativeWork
    461 https://doi.org/10.1101/gr.5969107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034259503
    462 rdf:type schema:CreativeWork
    463 https://doi.org/10.1110/ps.051857206 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013126819
    464 rdf:type schema:CreativeWork
    465 https://doi.org/10.1111/1462-2920.12452 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036338084
    466 rdf:type schema:CreativeWork
    467 https://doi.org/10.1111/1462-2920.14031 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099736332
    468 rdf:type schema:CreativeWork
    469 https://doi.org/10.1111/1751-7915.12592 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006960132
    470 rdf:type schema:CreativeWork
    471 https://doi.org/10.1111/j.1365-2958.2010.07279.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1003819779
    472 rdf:type schema:CreativeWork
    473 https://doi.org/10.1111/j.1399-3054.2011.01508.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1051138048
    474 rdf:type schema:CreativeWork
    475 https://doi.org/10.1111/j.1469-8137.2009.03160.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1036037474
    476 rdf:type schema:CreativeWork
    477 https://doi.org/10.1126/science.1203980 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020956367
    478 rdf:type schema:CreativeWork
    479 https://doi.org/10.1126/science.1261359 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029773582
    480 rdf:type schema:CreativeWork
    481 https://doi.org/10.1126/science.aap9516 schema:sameAs https://app.dimensions.ai/details/publication/pub.1100476550
    482 rdf:type schema:CreativeWork
    483 https://doi.org/10.1128/aem.00062-07 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045980007
    484 rdf:type schema:CreativeWork
    485 https://doi.org/10.1128/aem.01708-16 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062710286
    486 rdf:type schema:CreativeWork
    487 https://doi.org/10.1128/aem.05255-11 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012456869
    488 rdf:type schema:CreativeWork
    489 https://doi.org/10.1128/jb.00898-06 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030948381
    490 rdf:type schema:CreativeWork
    491 https://doi.org/10.1146/annurev-phyto-080516-035513 schema:sameAs https://app.dimensions.ai/details/publication/pub.1086119743
    492 rdf:type schema:CreativeWork
    493 https://doi.org/10.1371/journal.pbio.2001793 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084270053
    494 rdf:type schema:CreativeWork
    495 https://doi.org/10.2307/2484763 schema:sameAs https://app.dimensions.ai/details/publication/pub.1102612753
    496 rdf:type schema:CreativeWork
    497 https://doi.org/10.3389/fmicb.2014.00294 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033125859
    498 rdf:type schema:CreativeWork
    499 https://doi.org/10.3389/fmicb.2017.02415 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099614677
    500 rdf:type schema:CreativeWork
    501 https://doi.org/10.3897/mycokeys.10.4852 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037069274
    502 rdf:type schema:CreativeWork
    503 https://www.grid.ac/institutes/grid.11956.3a schema:alternateName Stellenbosch University
    504 schema:name Department of Genetics, University of Stellenbosch, 7600, Stellenbsoch, South Africa
    505 rdf:type schema:Organization
    506 https://www.grid.ac/institutes/grid.15276.37 schema:alternateName University of Florida
    507 schema:name Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA
    508 Citrus Research and Education Center, Department of Plant Pathology, IFAS, University of Florida, 33885, Lake Alfred, FL, USA
    509 rdf:type schema:Organization
    510 https://www.grid.ac/institutes/grid.20561.30 schema:alternateName South China Agricultural University
    511 schema:name Department of Plant Pathology, South China Agricultural University, 510642, Guangzhou, China
    512 rdf:type schema:Organization
    513 https://www.grid.ac/institutes/grid.21155.32 schema:alternateName Beijing Genomics Institute
    514 schema:name BGI-Qingdao, BGI-Shenzhen, 266510, Qingdao, Shangdong, China
    515 BGI-Shenzhen, 518083, Shenzhen, Guangdong, China
    516 China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China
    517 rdf:type schema:Organization
    518 https://www.grid.ac/institutes/grid.256609.e schema:alternateName Guangxi University
    519 schema:name Guangxi University, 530004, Nanning, Guangxi, China
    520 rdf:type schema:Organization
    521 https://www.grid.ac/institutes/grid.266097.c schema:alternateName University of California, Riverside
    522 schema:name University of California, 92521, Riverside, CA, USA
    523 rdf:type schema:Organization
    524 https://www.grid.ac/institutes/grid.268415.c schema:alternateName Yangzhou University
    525 schema:name Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA
    526 College of Bioscience and Biotechnology, Yangzhou University, 225009, Yangzhou, Jiangsu, China
    527 rdf:type schema:Organization
    528 https://www.grid.ac/institutes/grid.410726.6 schema:alternateName University of Chinese Academy of Sciences
    529 schema:name BGI Education Center, University of Chinese Academy of Sciences, 518083, Shenzhen, Guangdong, China
    530 BGI-Shenzhen, 518083, Shenzhen, Guangdong, China
    531 China National GeneBank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China
    532 rdf:type schema:Organization
    533 https://www.grid.ac/institutes/grid.412846.d schema:alternateName Sultan Qaboos University
    534 schema:name Department of Crop Sciences, Sultan Qaboos University, 123, Muscat, Oman
    535 rdf:type schema:Organization
    536 https://www.grid.ac/institutes/grid.419190.4 schema:alternateName Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria
    537 schema:name Dept. Plant Protection, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), 28040, Madrid, Spain
    538 rdf:type schema:Organization
    539 https://www.grid.ac/institutes/grid.452491.f schema:alternateName Agência Paulista de Tecnologia dos Agronegócios
    540 schema:name Instituto Agronômico, IAC Centro de Citricultura Sylvio Moreira, CCSM, 13490, Cordeirópolis, São Paulo, Brazil
    541 rdf:type schema:Organization
    542 https://www.grid.ac/institutes/grid.464055.6 schema:alternateName Peuplement Végétaux et Bio-agresseurs en Milieu Tropical
    543 schema:name CIRAD, UMR BGPI, F-34398, Montpellier, Hérault, France
    544 CIRAD, UMR PVBMT, F-97410, St Pierre, La Réunion, France
    545 rdf:type schema:Organization
    546 https://www.grid.ac/institutes/grid.464274.7 schema:alternateName Gannan Normal University
    547 schema:name China-USA Citrus Huanglongbing Joint Laboratory (A joint laboratory of The University of Florida’s Institute of Food and Agricultural Sciences and Gannan Normal University), National Navel Orange Engineering Research Center, Gannan Normal University, 341000, Ganzhou, Jiangxi, China
    548 Citrus Research and Education Center, Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 33885, Lake Alfred, FL, USA
    549 National Navel Orange Engineering Research Center, Gannan Normal University, 341000, Ganzhou, Jiangxi, China
    550 rdf:type schema:Organization
    551 https://www.grid.ac/institutes/grid.47894.36 schema:alternateName Colorado State University
    552 schema:name Department of Bioagricultural Sciences and Pest Management, Colorado State University, 80523, Fort Collins, CO, USA
    553 rdf:type schema:Organization
    554 https://www.grid.ac/institutes/grid.8158.4 schema:alternateName University of Catania
    555 schema:name Dipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Via Santa Sofia 100, 95123, Catania, Italy
    556 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...