Ontology type: schema:ScholarlyArticle Open Access: True
2017-12
AUTHORSNathan G. Swenson, Yoshiko Iida, Robert Howe, Amy Wolf, María Natalia Umaña, Krittika Petprakob, Benjamin L. Turner, Keping Ma
ABSTRACTThe distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure. More... »
PAGES1996
http://scigraph.springernature.com/pub.10.1038/s41467-017-02034-w
DOIhttp://dx.doi.org/10.1038/s41467-017-02034-w
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1093156819
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/29222461
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0602",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Ecology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Droughts",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Environment",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Forests",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Profiling",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Plant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Dispersal",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transcriptome",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Maryland, College Park",
"id": "https://www.grid.ac/institutes/grid.164295.d",
"name": [
"Department of Biology, University of Maryland, 20742, College Park, MD, USA"
],
"type": "Organization"
},
"familyName": "Swenson",
"givenName": "Nathan G.",
"id": "sg:person.01067422307.92",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01067422307.92"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Forestry and Forest Products Research Institute",
"id": "https://www.grid.ac/institutes/grid.417935.d",
"name": [
"Kyushu Research Center, Forestry and Forest Products Research Institute, 860-0862, Kumamoto, Japan"
],
"type": "Organization"
},
"familyName": "Iida",
"givenName": "Yoshiko",
"id": "sg:person.012437672441.14",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012437672441.14"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Wisconsin\u2013Green Bay",
"id": "https://www.grid.ac/institutes/grid.267461.0",
"name": [
"Department of Natural and Applied Sciences, University of Wisconsin-Green Bay, 54311, Green Bay, WI, USA"
],
"type": "Organization"
},
"familyName": "Howe",
"givenName": "Robert",
"id": "sg:person.0602740516.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0602740516.15"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Wisconsin\u2013Green Bay",
"id": "https://www.grid.ac/institutes/grid.267461.0",
"name": [
"Department of Natural and Applied Sciences, University of Wisconsin-Green Bay, 54311, Green Bay, WI, USA"
],
"type": "Organization"
},
"familyName": "Wolf",
"givenName": "Amy",
"id": "sg:person.0654715016.04",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0654715016.04"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Maryland, College Park",
"id": "https://www.grid.ac/institutes/grid.164295.d",
"name": [
"Department of Biology, University of Maryland, 20742, College Park, MD, USA"
],
"type": "Organization"
},
"familyName": "Uma\u00f1a",
"givenName": "Mar\u00eda Natalia",
"id": "sg:person.01242755507.72",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01242755507.72"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Maryland, College Park",
"id": "https://www.grid.ac/institutes/grid.164295.d",
"name": [
"Department of Biology, University of Maryland, 20742, College Park, MD, USA"
],
"type": "Organization"
},
"familyName": "Petprakob",
"givenName": "Krittika",
"id": "sg:person.015773324461.42",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015773324461.42"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Smithsonian Tropical Research Institute",
"id": "https://www.grid.ac/institutes/grid.438006.9",
"name": [
"Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Ancon, Republic of Panama"
],
"type": "Organization"
},
"familyName": "Turner",
"givenName": "Benjamin L.",
"id": "sg:person.012643310450.29",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012643310450.29"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Botany",
"id": "https://www.grid.ac/institutes/grid.435133.3",
"name": [
"State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, 100093, Beijing, China"
],
"type": "Organization"
},
"familyName": "Ma",
"givenName": "Keping",
"id": "sg:person.01167064531.95",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01167064531.95"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1126/science.1160662",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000013907"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature16476",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000051465",
"https://doi.org/10.1038/nature16476"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature02403",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001558611",
"https://doi.org/10.1038/nature02403"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature02403",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001558611",
"https://doi.org/10.1038/nature02403"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ygeno.2011.04.007",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002543972"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1098/rstb.1996.0115",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003025272"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1469-8137.2010.03359.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005943336"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/erl164",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005981445"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bti610",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006001436"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.92.10.4114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006483473"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0604666104",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009772361"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1461-0248.2009.01285.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010594105"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1600-0587.2012.00121.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010601796"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1413650112",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011303390"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1300673111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011894521"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btn025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012266713"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1523-1739.2010.01455.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013629492"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1523-1739.2010.01455.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013629492"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tree.2006.02.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014600667"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.1883",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015803168",
"https://doi.org/10.1038/nbt.1883"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1365-2745.12401",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015922282"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature16489",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016316314",
"https://doi.org/10.1038/nature16489"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.110.161752",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022283411"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature14213",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022663778",
"https://doi.org/10.1038/nature14213"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp616",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023247882"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5402/2012/743617",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024558138"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1360-1385(02)02312-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025007902"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nclimate2067",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027365474",
"https://doi.org/10.1038/nclimate2067"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10725-005-0002-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027441766",
"https://doi.org/10.1007/s10725-005-0002-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10725-005-0002-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027441766",
"https://doi.org/10.1007/s10725-005-0002-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/mss136",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028807864"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-2745.2003.00810.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028850379"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4614-9542-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029898160",
"https://doi.org/10.1007/978-1-4614-9542-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4614-9542-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029898160",
"https://doi.org/10.1007/978-1-4614-9542-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fgene.2014.00358",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034137044"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1214/aos/1013699998",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036427477"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/50.332.375",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037082359"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1890/0012-9615(2006)076[0521:ttsdaw]2.0.co;2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039738850"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/gcb.12637",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041226648"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3040.2006.01628.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043794639"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1890/11-0402.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044201623"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature05747",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045492746",
"https://doi.org/10.1038/nature05747"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.ecolsys.33.010802.150452",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047771575"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-13-680",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049842127",
"https://doi.org/10.1186/1471-2164-13-680"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-13-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051998628",
"https://doi.org/10.1186/1471-2164-13-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/ele.12161",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053345005"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pcw102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059972087"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pcw102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059972087"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/2387724",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1069904458"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1075341913",
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1365-2745.12771",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084861575"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1365-2745.12765",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084861806"
],
"type": "CreativeWork"
}
],
"datePublished": "2017-12",
"datePublishedReg": "2017-12-01",
"description": "The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure.",
"genre": "research_article",
"id": "sg:pub.10.1038/s41467-017-02034-w",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.3480211",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1043282",
"issn": [
"2041-1723"
],
"name": "Nature Communications",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "8"
}
],
"name": "Tree co-occurrence and transcriptomic response to drought",
"pagination": "1996",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"188c7a5f7f7c1a5d57c39098bd6f5bb7fef9c4b2da8916ade4b9ee7eae03df35"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"29222461"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101528555"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/s41467-017-02034-w"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1093156819"
]
}
],
"sameAs": [
"https://doi.org/10.1038/s41467-017-02034-w",
"https://app.dimensions.ai/details/publication/pub.1093156819"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T14:23",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000602.jsonl",
"type": "ScholarlyArticle",
"url": "https://www.nature.com/articles/s41467-017-02034-w"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41467-017-02034-w'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41467-017-02034-w'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41467-017-02034-w'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41467-017-02034-w'
This table displays all metadata directly associated to this object as RDF triples.
314 TRIPLES
21 PREDICATES
84 URIs
29 LITERALS
17 BLANK NODES