Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-03-09

AUTHORS

Jonathan W. Leff, Richard D. Bardgett, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, David Johnson, Elizabeth M. Baggs, Noah Fierer

ABSTRACT

There are numerous ways in which plants can influence the composition of soil communities. However, it remains unclear whether information on plant community attributes, including taxonomic, phylogenetic, or trait-based composition, can be used to predict the structure of soil communities. We tested, in both monocultures and field-grown mixed temperate grassland communities, whether plant attributes predict soil communities including taxonomic groups from across the tree of life (fungi, bacteria, protists, and metazoa). The composition of all soil community groups was affected by plant species identity, both in monocultures and in mixed communities. Moreover, plant community composition predicted additional variation in soil community composition beyond what could be predicted from soil abiotic characteristics. In addition, analysis of the field aboveground plant community composition and the composition of plant roots suggests that plant community attributes are better predictors of soil communities than root distributions. However, neither plant phylogeny nor plant traits were strong predictors of soil communities in either experiment. Our results demonstrate that grassland plant species form specific associations with soil community members and that information on plant species distributions can improve predictions of soil community composition. These results indicate that specific associations between plant species and complex soil communities are key determinants of biodiversity patterns in grassland soils. More... »

PAGES

1794-1805

References to SciGraph publications

  • 1998-11. Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity in NATURE
  • 2016-05-23. DADA2: High resolution sample inference from Illumina amplicon data in NATURE METHODS
  • 2008-08-28. Plant host habitat and root exudates shape soil bacterial community structure in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2011-12-01. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2015-07-14. Tree diversity and species identity effects on soil fungi, protists and animals are context dependent in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2016-12-19. Relic DNA is abundant in soil and obscures estimates of soil microbial diversity in NATURE MICROBIOLOGY
  • 2013-04-18. Strong coupling of plant and fungal community structure across western Amazonian rainforests in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2016-09-21. Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests in SCIENTIFIC REPORTS
  • 2009-07-01. Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2012-12-13. Global biogeography of highly diverse protistan communities in soil in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2010-09-09. UniFrac: an effective distance metric for microbial community comparison in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41396-018-0089-x

    DOI

    http://dx.doi.org/10.1038/s41396-018-0089-x

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1101403947

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/29523892


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/05", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Environmental Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0502", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Environmental Science and Management", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0503", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Soil Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0602", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Ecology", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Plant Biology", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Bacteria", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Biodiversity", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Fungi", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phenotype", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Plant Roots", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Plants", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Soil", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Soil Microbiology", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA", 
              "id": "http://www.grid.ac/institutes/grid.266190.a", 
              "name": [
                "Cooperative Institute for Research in Environmental Sciences, University of Colorado, 80309, Boulder, CO, USA", 
                "Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Leff", 
            "givenName": "Jonathan W.", 
            "id": "sg:person.01311137324.29", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311137324.29"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK", 
              "id": "http://www.grid.ac/institutes/grid.5379.8", 
              "name": [
                "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bardgett", 
            "givenName": "Richard D.", 
            "id": "sg:person.0615512644.42", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0615512644.42"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK", 
              "id": "http://www.grid.ac/institutes/grid.5379.8", 
              "name": [
                "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wilkinson", 
            "givenName": "Anna", 
            "id": "sg:person.01041426523.20", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041426523.20"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Geosciences, Grant Institute, The King\u2019s Buildings, James Hutton Road, EH9 3FE, Edinburgh, UK", 
              "id": "http://www.grid.ac/institutes/None", 
              "name": [
                "School of Geosciences, Grant Institute, The King\u2019s Buildings, James Hutton Road, EH9 3FE, Edinburgh, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Jackson", 
            "givenName": "Benjamin G.", 
            "id": "sg:person.012046530001.39", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012046530001.39"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK", 
              "id": "http://www.grid.ac/institutes/grid.5379.8", 
              "name": [
                "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pritchard", 
            "givenName": "William J.", 
            "id": "sg:person.015231516104.31", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015231516104.31"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK", 
              "id": "http://www.grid.ac/institutes/grid.5379.8", 
              "name": [
                "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "De Long", 
            "givenName": "Jonathan R.", 
            "id": "sg:person.01030240441.31", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01030240441.31"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK", 
              "id": "http://www.grid.ac/institutes/grid.9835.7", 
              "name": [
                "Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Oakley", 
            "givenName": "Simon", 
            "id": "sg:person.0764425574.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764425574.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK", 
              "id": "http://www.grid.ac/institutes/grid.9835.7", 
              "name": [
                "Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mason", 
            "givenName": "Kelly E.", 
            "id": "sg:person.011053257654.88", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011053257654.88"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK", 
              "id": "http://www.grid.ac/institutes/grid.9835.7", 
              "name": [
                "Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ostle", 
            "givenName": "Nicholas J.", 
            "id": "sg:person.013140022544.29", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013140022544.29"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK", 
              "id": "http://www.grid.ac/institutes/grid.5379.8", 
              "name": [
                "School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Johnson", 
            "givenName": "David", 
            "id": "sg:person.01361505171.95", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361505171.95"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "The Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus Buildings, EH25 9RG, Midlothian, UK", 
              "id": "http://www.grid.ac/institutes/grid.4305.2", 
              "name": [
                "The Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus Buildings, EH25 9RG, Midlothian, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Baggs", 
            "givenName": "Elizabeth M.", 
            "id": "sg:person.01023127441.76", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023127441.76"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA", 
              "id": "http://www.grid.ac/institutes/grid.266190.a", 
              "name": [
                "Cooperative Institute for Research in Environmental Sciences, University of Colorado, 80309, Boulder, CO, USA", 
                "Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Fierer", 
            "givenName": "Noah", 
            "id": "sg:person.01061615031.38", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061615031.38"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1038/ismej.2015.116", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002486856", 
              "https://doi.org/10.1038/ismej.2015.116"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00253-009-2092-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028424411", 
              "https://doi.org/10.1007/s00253-009-2092-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmicrobiol.2016.242", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043217898", 
              "https://doi.org/10.1038/nmicrobiol.2016.242"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/srep33696", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040124255", 
              "https://doi.org/10.1038/srep33696"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2010.133", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042916034", 
              "https://doi.org/10.1038/ismej.2010.133"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2013.66", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053628593", 
              "https://doi.org/10.1038/ismej.2013.66"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/23932", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032928549", 
              "https://doi.org/10.1038/23932"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2008.80", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044545406", 
              "https://doi.org/10.1038/ismej.2008.80"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2012.147", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048627331", 
              "https://doi.org/10.1038/ismej.2012.147"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2011.139", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051863807", 
              "https://doi.org/10.1038/ismej.2011.139"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.3869", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016631324", 
              "https://doi.org/10.1038/nmeth.3869"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2018-03-09", 
        "datePublishedReg": "2018-03-09", 
        "description": "There are numerous ways in which plants can influence the composition of soil communities. However, it remains unclear whether information on plant community attributes, including taxonomic, phylogenetic, or trait-based composition, can be used to predict the structure of soil communities. We tested, in both monocultures and field-grown mixed temperate grassland communities, whether plant attributes predict soil communities including taxonomic groups from across the tree of life (fungi, bacteria, protists, and metazoa). The composition of all soil community groups was affected by plant species identity, both in monocultures and in mixed communities. Moreover, plant community composition predicted additional variation in soil community composition beyond what could be predicted from soil abiotic characteristics. In addition, analysis of the field aboveground plant community composition and the composition of plant roots suggests that plant community attributes are better predictors of soil communities than root distributions. However, neither plant phylogeny nor plant traits were strong predictors of soil communities in either experiment. Our results demonstrate that grassland plant species form specific associations with soil community members and that information on plant species distributions can improve predictions of soil community composition. These results indicate that specific associations between plant species and complex soil communities are key determinants of biodiversity patterns in grassland soils.", 
        "genre": "article", 
        "id": "sg:pub.10.1038/s41396-018-0089-x", 
        "inLanguage": "en", 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.2783078", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.2763575", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.2781677", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.3862533", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.6944893", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.4313056", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.7443623", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.2771509", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1038436", 
            "issn": [
              "1751-7362", 
              "1751-7370"
            ], 
            "name": "The ISME Journal: Multidisciplinary Journal of Microbial Ecology", 
            "publisher": "Springer Nature", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "7", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "12"
          }
        ], 
        "keywords": [
          "soil community composition", 
          "soil communities", 
          "plant community composition", 
          "plant community attributes", 
          "community composition", 
          "community attributes", 
          "plant species", 
          "soil abiotic characteristics", 
          "plant species identity", 
          "grassland plant species", 
          "plant species distribution", 
          "temperate grassland communities", 
          "complex soil communities", 
          "biodiversity patterns", 
          "grassland communities", 
          "tree of life", 
          "abiotic characteristics", 
          "species distribution", 
          "plant traits", 
          "root distribution", 
          "species identity", 
          "plant attributes", 
          "taxonomic groups", 
          "plant roots", 
          "plant phylogeny", 
          "mixed communities", 
          "specific association", 
          "community", 
          "monoculture", 
          "additional variation", 
          "species", 
          "phylogeny", 
          "community groups", 
          "best predictor", 
          "composition", 
          "traits", 
          "grasslands", 
          "community members", 
          "numerous ways", 
          "key determinant", 
          "attributes", 
          "trees", 
          "distribution", 
          "plants", 
          "roots", 
          "taxonomy", 
          "strongest predictor", 
          "variation", 
          "patterns", 
          "members", 
          "information", 
          "structure", 
          "identity", 
          "association", 
          "predictors", 
          "results", 
          "determinants", 
          "prediction", 
          "experiments", 
          "addition", 
          "characteristics", 
          "analysis", 
          "group", 
          "way", 
          "life", 
          "field-grown mixed temperate grassland communities", 
          "mixed temperate grassland communities", 
          "soil community groups", 
          "field aboveground plant community composition", 
          "aboveground plant community composition", 
          "soil community members", 
          "plant community taxonomy", 
          "community taxonomy"
        ], 
        "name": "Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits", 
        "pagination": "1794-1805", 
        "productId": [
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1101403947"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1038/s41396-018-0089-x"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "29523892"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1038/s41396-018-0089-x", 
          "https://app.dimensions.ai/details/publication/pub.1101403947"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2021-12-01T19:42", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-springernature-scigraph/baseset/20211201/entities/gbq_results/article/article_772.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://doi.org/10.1038/s41396-018-0089-x"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/s41396-018-0089-x'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/s41396-018-0089-x'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/s41396-018-0089-x'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/s41396-018-0089-x'


     

    This table displays all metadata directly associated to this object as RDF triples.

    339 TRIPLES      22 PREDICATES      123 URIs      100 LITERALS      16 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1038/s41396-018-0089-x schema:about N0147387c6df24ab8908aaa3d00605834
    2 N154e4ba6056e4e23b7ce51bfd91b3c34
    3 N2be49093842e49b4ad14e9868d8daa2e
    4 N34383e45032747a69639fab1cae2bee7
    5 N8c718c6e98614aba8728a47dbb07d36d
    6 Nc55f1f143d9d42a7bd8b0366682cbdae
    7 Nccf78a4bb1714068928505411cf1c6d0
    8 Necaa890ccb6c4c95bd1b42cd9ec1ddc0
    9 Nf68ab5b5e7bf463ebb71e80e7ba75e54
    10 anzsrc-for:05
    11 anzsrc-for:0502
    12 anzsrc-for:0503
    13 anzsrc-for:06
    14 anzsrc-for:0602
    15 anzsrc-for:0607
    16 schema:author N70d5203a5a684ec7b4ee54f904e92d91
    17 schema:citation sg:pub.10.1007/s00253-009-2092-7
    18 sg:pub.10.1038/23932
    19 sg:pub.10.1038/ismej.2008.80
    20 sg:pub.10.1038/ismej.2010.133
    21 sg:pub.10.1038/ismej.2011.139
    22 sg:pub.10.1038/ismej.2012.147
    23 sg:pub.10.1038/ismej.2013.66
    24 sg:pub.10.1038/ismej.2015.116
    25 sg:pub.10.1038/nmeth.3869
    26 sg:pub.10.1038/nmicrobiol.2016.242
    27 sg:pub.10.1038/srep33696
    28 schema:datePublished 2018-03-09
    29 schema:datePublishedReg 2018-03-09
    30 schema:description There are numerous ways in which plants can influence the composition of soil communities. However, it remains unclear whether information on plant community attributes, including taxonomic, phylogenetic, or trait-based composition, can be used to predict the structure of soil communities. We tested, in both monocultures and field-grown mixed temperate grassland communities, whether plant attributes predict soil communities including taxonomic groups from across the tree of life (fungi, bacteria, protists, and metazoa). The composition of all soil community groups was affected by plant species identity, both in monocultures and in mixed communities. Moreover, plant community composition predicted additional variation in soil community composition beyond what could be predicted from soil abiotic characteristics. In addition, analysis of the field aboveground plant community composition and the composition of plant roots suggests that plant community attributes are better predictors of soil communities than root distributions. However, neither plant phylogeny nor plant traits were strong predictors of soil communities in either experiment. Our results demonstrate that grassland plant species form specific associations with soil community members and that information on plant species distributions can improve predictions of soil community composition. These results indicate that specific associations between plant species and complex soil communities are key determinants of biodiversity patterns in grassland soils.
    31 schema:genre article
    32 schema:inLanguage en
    33 schema:isAccessibleForFree true
    34 schema:isPartOf N8de2c53ed2574d079ae34c3d692179fb
    35 N95fae976085d42f09bf76f4998812722
    36 sg:journal.1038436
    37 schema:keywords abiotic characteristics
    38 aboveground plant community composition
    39 addition
    40 additional variation
    41 analysis
    42 association
    43 attributes
    44 best predictor
    45 biodiversity patterns
    46 characteristics
    47 community
    48 community attributes
    49 community composition
    50 community groups
    51 community members
    52 community taxonomy
    53 complex soil communities
    54 composition
    55 determinants
    56 distribution
    57 experiments
    58 field aboveground plant community composition
    59 field-grown mixed temperate grassland communities
    60 grassland communities
    61 grassland plant species
    62 grasslands
    63 group
    64 identity
    65 information
    66 key determinant
    67 life
    68 members
    69 mixed communities
    70 mixed temperate grassland communities
    71 monoculture
    72 numerous ways
    73 patterns
    74 phylogeny
    75 plant attributes
    76 plant community attributes
    77 plant community composition
    78 plant community taxonomy
    79 plant phylogeny
    80 plant roots
    81 plant species
    82 plant species distribution
    83 plant species identity
    84 plant traits
    85 plants
    86 prediction
    87 predictors
    88 results
    89 root distribution
    90 roots
    91 soil abiotic characteristics
    92 soil communities
    93 soil community composition
    94 soil community groups
    95 soil community members
    96 species
    97 species distribution
    98 species identity
    99 specific association
    100 strongest predictor
    101 structure
    102 taxonomic groups
    103 taxonomy
    104 temperate grassland communities
    105 traits
    106 tree of life
    107 trees
    108 variation
    109 way
    110 schema:name Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits
    111 schema:pagination 1794-1805
    112 schema:productId N39f37f01d2094d8bb4a5ed015760607a
    113 N5a5f2e64f2644c98b5d214b5c7ae1e68
    114 N6b269b7ea47c4e8f9356311cc5085eed
    115 schema:sameAs https://app.dimensions.ai/details/publication/pub.1101403947
    116 https://doi.org/10.1038/s41396-018-0089-x
    117 schema:sdDatePublished 2021-12-01T19:42
    118 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    119 schema:sdPublisher Ne04f6f25cc004f5ca059398c7a4533b2
    120 schema:url https://doi.org/10.1038/s41396-018-0089-x
    121 sgo:license sg:explorer/license/
    122 sgo:sdDataset articles
    123 rdf:type schema:ScholarlyArticle
    124 N0147387c6df24ab8908aaa3d00605834 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    125 schema:name Fungi
    126 rdf:type schema:DefinedTerm
    127 N0b76be39ad514e6db9804ab14b58ef08 rdf:first sg:person.01041426523.20
    128 rdf:rest N39d4bc60df7e42a39b99927a65b79fda
    129 N154e4ba6056e4e23b7ce51bfd91b3c34 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    130 schema:name Soil Microbiology
    131 rdf:type schema:DefinedTerm
    132 N2be49093842e49b4ad14e9868d8daa2e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    133 schema:name Phenotype
    134 rdf:type schema:DefinedTerm
    135 N34383e45032747a69639fab1cae2bee7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    136 schema:name Phylogeny
    137 rdf:type schema:DefinedTerm
    138 N3684192bab6a499b93062483e778ef44 rdf:first sg:person.01361505171.95
    139 rdf:rest Nc9e22af7f07a481d9ffae4f5b44bcac3
    140 N39d4bc60df7e42a39b99927a65b79fda rdf:first sg:person.012046530001.39
    141 rdf:rest Ne6320c1b29614e5c81d28cb26d172cfb
    142 N39f37f01d2094d8bb4a5ed015760607a schema:name doi
    143 schema:value 10.1038/s41396-018-0089-x
    144 rdf:type schema:PropertyValue
    145 N52250c653b7845d497051b1ac43657ec rdf:first sg:person.0615512644.42
    146 rdf:rest N0b76be39ad514e6db9804ab14b58ef08
    147 N5a5f2e64f2644c98b5d214b5c7ae1e68 schema:name pubmed_id
    148 schema:value 29523892
    149 rdf:type schema:PropertyValue
    150 N6942dff91ac04bfab079ba2073705a03 rdf:first sg:person.01030240441.31
    151 rdf:rest N6dec44f4c5fd42d4adeae6ed7679e531
    152 N6b269b7ea47c4e8f9356311cc5085eed schema:name dimensions_id
    153 schema:value pub.1101403947
    154 rdf:type schema:PropertyValue
    155 N6dec44f4c5fd42d4adeae6ed7679e531 rdf:first sg:person.0764425574.14
    156 rdf:rest Ncbe8bc178f4d449abd23cdaf4a3bd3a8
    157 N70d5203a5a684ec7b4ee54f904e92d91 rdf:first sg:person.01311137324.29
    158 rdf:rest N52250c653b7845d497051b1ac43657ec
    159 N8c718c6e98614aba8728a47dbb07d36d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    160 schema:name Plant Roots
    161 rdf:type schema:DefinedTerm
    162 N8de2c53ed2574d079ae34c3d692179fb schema:volumeNumber 12
    163 rdf:type schema:PublicationVolume
    164 N95fae976085d42f09bf76f4998812722 schema:issueNumber 7
    165 rdf:type schema:PublicationIssue
    166 Nbe1c0e834a224b9abf48680e0361e32f rdf:first sg:person.01061615031.38
    167 rdf:rest rdf:nil
    168 Nc55f1f143d9d42a7bd8b0366682cbdae schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    169 schema:name Plants
    170 rdf:type schema:DefinedTerm
    171 Nc9e22af7f07a481d9ffae4f5b44bcac3 rdf:first sg:person.01023127441.76
    172 rdf:rest Nbe1c0e834a224b9abf48680e0361e32f
    173 Ncbe8bc178f4d449abd23cdaf4a3bd3a8 rdf:first sg:person.011053257654.88
    174 rdf:rest Ncec3f5d088d44bcc8642518dbd677039
    175 Nccf78a4bb1714068928505411cf1c6d0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    176 schema:name Bacteria
    177 rdf:type schema:DefinedTerm
    178 Ncec3f5d088d44bcc8642518dbd677039 rdf:first sg:person.013140022544.29
    179 rdf:rest N3684192bab6a499b93062483e778ef44
    180 Ne04f6f25cc004f5ca059398c7a4533b2 schema:name Springer Nature - SN SciGraph project
    181 rdf:type schema:Organization
    182 Ne6320c1b29614e5c81d28cb26d172cfb rdf:first sg:person.015231516104.31
    183 rdf:rest N6942dff91ac04bfab079ba2073705a03
    184 Necaa890ccb6c4c95bd1b42cd9ec1ddc0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    185 schema:name Biodiversity
    186 rdf:type schema:DefinedTerm
    187 Nf68ab5b5e7bf463ebb71e80e7ba75e54 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    188 schema:name Soil
    189 rdf:type schema:DefinedTerm
    190 anzsrc-for:05 schema:inDefinedTermSet anzsrc-for:
    191 schema:name Environmental Sciences
    192 rdf:type schema:DefinedTerm
    193 anzsrc-for:0502 schema:inDefinedTermSet anzsrc-for:
    194 schema:name Environmental Science and Management
    195 rdf:type schema:DefinedTerm
    196 anzsrc-for:0503 schema:inDefinedTermSet anzsrc-for:
    197 schema:name Soil Sciences
    198 rdf:type schema:DefinedTerm
    199 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    200 schema:name Biological Sciences
    201 rdf:type schema:DefinedTerm
    202 anzsrc-for:0602 schema:inDefinedTermSet anzsrc-for:
    203 schema:name Ecology
    204 rdf:type schema:DefinedTerm
    205 anzsrc-for:0607 schema:inDefinedTermSet anzsrc-for:
    206 schema:name Plant Biology
    207 rdf:type schema:DefinedTerm
    208 sg:grant.2763575 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    209 rdf:type schema:MonetaryGrant
    210 sg:grant.2771509 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    211 rdf:type schema:MonetaryGrant
    212 sg:grant.2781677 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    213 rdf:type schema:MonetaryGrant
    214 sg:grant.2783078 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    215 rdf:type schema:MonetaryGrant
    216 sg:grant.3862533 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    217 rdf:type schema:MonetaryGrant
    218 sg:grant.4313056 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    219 rdf:type schema:MonetaryGrant
    220 sg:grant.6944893 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    221 rdf:type schema:MonetaryGrant
    222 sg:grant.7443623 http://pending.schema.org/fundedItem sg:pub.10.1038/s41396-018-0089-x
    223 rdf:type schema:MonetaryGrant
    224 sg:journal.1038436 schema:issn 1751-7362
    225 1751-7370
    226 schema:name The ISME Journal: Multidisciplinary Journal of Microbial Ecology
    227 schema:publisher Springer Nature
    228 rdf:type schema:Periodical
    229 sg:person.01023127441.76 schema:affiliation grid-institutes:grid.4305.2
    230 schema:familyName Baggs
    231 schema:givenName Elizabeth M.
    232 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023127441.76
    233 rdf:type schema:Person
    234 sg:person.01030240441.31 schema:affiliation grid-institutes:grid.5379.8
    235 schema:familyName De Long
    236 schema:givenName Jonathan R.
    237 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01030240441.31
    238 rdf:type schema:Person
    239 sg:person.01041426523.20 schema:affiliation grid-institutes:grid.5379.8
    240 schema:familyName Wilkinson
    241 schema:givenName Anna
    242 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041426523.20
    243 rdf:type schema:Person
    244 sg:person.01061615031.38 schema:affiliation grid-institutes:grid.266190.a
    245 schema:familyName Fierer
    246 schema:givenName Noah
    247 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061615031.38
    248 rdf:type schema:Person
    249 sg:person.011053257654.88 schema:affiliation grid-institutes:grid.9835.7
    250 schema:familyName Mason
    251 schema:givenName Kelly E.
    252 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011053257654.88
    253 rdf:type schema:Person
    254 sg:person.012046530001.39 schema:affiliation grid-institutes:None
    255 schema:familyName Jackson
    256 schema:givenName Benjamin G.
    257 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012046530001.39
    258 rdf:type schema:Person
    259 sg:person.01311137324.29 schema:affiliation grid-institutes:grid.266190.a
    260 schema:familyName Leff
    261 schema:givenName Jonathan W.
    262 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311137324.29
    263 rdf:type schema:Person
    264 sg:person.013140022544.29 schema:affiliation grid-institutes:grid.9835.7
    265 schema:familyName Ostle
    266 schema:givenName Nicholas J.
    267 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013140022544.29
    268 rdf:type schema:Person
    269 sg:person.01361505171.95 schema:affiliation grid-institutes:grid.5379.8
    270 schema:familyName Johnson
    271 schema:givenName David
    272 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361505171.95
    273 rdf:type schema:Person
    274 sg:person.015231516104.31 schema:affiliation grid-institutes:grid.5379.8
    275 schema:familyName Pritchard
    276 schema:givenName William J.
    277 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015231516104.31
    278 rdf:type schema:Person
    279 sg:person.0615512644.42 schema:affiliation grid-institutes:grid.5379.8
    280 schema:familyName Bardgett
    281 schema:givenName Richard D.
    282 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0615512644.42
    283 rdf:type schema:Person
    284 sg:person.0764425574.14 schema:affiliation grid-institutes:grid.9835.7
    285 schema:familyName Oakley
    286 schema:givenName Simon
    287 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764425574.14
    288 rdf:type schema:Person
    289 sg:pub.10.1007/s00253-009-2092-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028424411
    290 https://doi.org/10.1007/s00253-009-2092-7
    291 rdf:type schema:CreativeWork
    292 sg:pub.10.1038/23932 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032928549
    293 https://doi.org/10.1038/23932
    294 rdf:type schema:CreativeWork
    295 sg:pub.10.1038/ismej.2008.80 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044545406
    296 https://doi.org/10.1038/ismej.2008.80
    297 rdf:type schema:CreativeWork
    298 sg:pub.10.1038/ismej.2010.133 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042916034
    299 https://doi.org/10.1038/ismej.2010.133
    300 rdf:type schema:CreativeWork
    301 sg:pub.10.1038/ismej.2011.139 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051863807
    302 https://doi.org/10.1038/ismej.2011.139
    303 rdf:type schema:CreativeWork
    304 sg:pub.10.1038/ismej.2012.147 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048627331
    305 https://doi.org/10.1038/ismej.2012.147
    306 rdf:type schema:CreativeWork
    307 sg:pub.10.1038/ismej.2013.66 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053628593
    308 https://doi.org/10.1038/ismej.2013.66
    309 rdf:type schema:CreativeWork
    310 sg:pub.10.1038/ismej.2015.116 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002486856
    311 https://doi.org/10.1038/ismej.2015.116
    312 rdf:type schema:CreativeWork
    313 sg:pub.10.1038/nmeth.3869 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016631324
    314 https://doi.org/10.1038/nmeth.3869
    315 rdf:type schema:CreativeWork
    316 sg:pub.10.1038/nmicrobiol.2016.242 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043217898
    317 https://doi.org/10.1038/nmicrobiol.2016.242
    318 rdf:type schema:CreativeWork
    319 sg:pub.10.1038/srep33696 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040124255
    320 https://doi.org/10.1038/srep33696
    321 rdf:type schema:CreativeWork
    322 grid-institutes:None schema:alternateName School of Geosciences, Grant Institute, The King’s Buildings, James Hutton Road, EH9 3FE, Edinburgh, UK
    323 schema:name School of Geosciences, Grant Institute, The King’s Buildings, James Hutton Road, EH9 3FE, Edinburgh, UK
    324 rdf:type schema:Organization
    325 grid-institutes:grid.266190.a schema:alternateName Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA
    326 schema:name Cooperative Institute for Research in Environmental Sciences, University of Colorado, 80309, Boulder, CO, USA
    327 Department of Ecology and Evolutionary Biology, University of Colorado, 80309, Boulder, CO, USA
    328 rdf:type schema:Organization
    329 grid-institutes:grid.4305.2 schema:alternateName The Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus Buildings, EH25 9RG, Midlothian, UK
    330 schema:name The Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus Buildings, EH25 9RG, Midlothian, UK
    331 rdf:type schema:Organization
    332 grid-institutes:grid.5379.8 schema:alternateName School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK
    333 schema:name School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK
    334 rdf:type schema:Organization
    335 grid-institutes:grid.9835.7 schema:alternateName Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK
    336 Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK
    337 schema:name Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, LA1 4AP, Lancaster, UK
    338 Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK
    339 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...