Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle View Full Text


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Article Info

DATE

2018-02-21

AUTHORS

Karthik Anantharaman, Bela Hausmann, Sean P. Jungbluth, Rose S. Kantor, Adi Lavy, Lesley A. Warren, Michael S. Rappé, Michael Pester, Alexander Loy, Brian C. Thomas, Jillian F. Banfield

ABSTRACT

A critical step in the biogeochemical cycle of sulfur on Earth is microbial sulfate reduction, yet organisms from relatively few lineages have been implicated in this process. Previous studies using functional marker genes have detected abundant, novel dissimilatory sulfite reductases (DsrAB) that could confer the capacity for microbial sulfite/sulfate reduction but were not affiliated with known organisms. Thus, the identity of a significant fraction of sulfate/sulfite-reducing microbes has remained elusive. Here we report the discovery of the capacity for sulfate/sulfite reduction in the genomes of organisms from 13 bacterial and archaeal phyla, thereby more than doubling the number of microbial phyla associated with this process. Eight of the 13 newly identified groups are candidate phyla that lack isolated representatives, a finding only possible given genomes from metagenomes. Organisms from Verrucomicrobia and two candidate phyla, Candidatus Rokubacteria and Candidatus Hydrothermarchaeota, contain some of the earliest evolved dsrAB genes. The capacity for sulfite reduction has been laterally transferred in multiple events within some phyla, and a key gene potentially capable of modulating sulfur metabolism in associated cells has been acquired by putatively symbiotic bacteria. We conclude that current functional predictions based on phylogeny significantly underestimate the extent of sulfate/sulfite reduction across Earth’s ecosystems. Understanding the prevalence of this capacity is integral to interpreting the carbon cycle because sulfate reduction is often coupled to turnover of buried organic carbon. Our findings expand the diversity of microbial groups associated with sulfur transformations in the environment and motivate revision of biogeochemical process models based on microbial community composition. More... »

PAGES

1715-1728

References to SciGraph publications

  • 2012-03-11. Identification and characterization of a bacterial hydrosulphide ion channel in NATURE
  • 1982-04. Mineralization of organic matter in the sea bed—the role of sulphate reduction in NATURE
  • 2013. Syntrophism Among Prokaryotes in THE PROKARYOTES
  • 2014-12-30. The I-TASSER Suite: protein structure and function prediction in NATURE METHODS
  • 2015-06-15. Unusual biology across a group comprising more than 15% of domain Bacteria in NATURE
  • 2015-06-05. Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2001-03. Isotopic evidence for microbial sulphate reduction in the early Archaean era in NATURE
  • 2008-06-24. Noisy: Identification of problematic columns in multiple sequence alignments in ALGORITHMS FOR MOLECULAR BIOLOGY
  • 2015-02-02. The octahaem MccA is a haem c–copper sulfite reductase in NATURE
  • 2016-04-11. A new view of the tree of life in NATURE MICROBIOLOGY
  • 2014-10-24. Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2017-03-28. Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2016-10-24. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system in NATURE COMMUNICATIONS
  • 2006-08-22. Importance of the DsrMKJOP complex for sulfur oxidation in Allochromatium vinosum and phylogenetic analysis of related complexes in other prokaryotes in ARCHIVES OF MICROBIOLOGY
  • 2004-04-11. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough in NATURE BIOTECHNOLOGY
  • 2017-03-28. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids in SCIENTIFIC DATA
  • 2008. Evolution and Ecology of Microbes Dissimilating Sulfur Compounds: Insights from Siroheme Sulfite Reductases in MICROBIAL SULFUR METABOLISM
  • 1971-10. Corrosion by the Sulphate-reducing Bacteria in NATURE
  • 2016-03-25. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/s41396-018-0078-0

    DOI

    http://dx.doi.org/10.1038/s41396-018-0078-0

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1101059542

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/29467397


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