Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2017-04-24

AUTHORS

Mariano Barbieri, Sheila Q Xie, Elena Torlai Triglia, Andrea M Chiariello, Simona Bianco, Inês de Santiago, Miguel R Branco, David Rueda, Mario Nicodemi, Ana Pombo

ABSTRACT

Homotypic interactions between active and Polycomb-repressed promoters co-occurring in the same DNA fiber, rather than CTCF occupancy, explain the 3D HoxB folding pattern.

PAGES

515-524

References to SciGraph publications

  • 2011-01-19. The Polycomb complex PRC2 and its mark in life in NATURE
  • 2010-07-16. CryoFISH: Fluorescence In Situ Hybridization on Ultrathin Cryosections in FLUORESCENCE IN SITU HYBRIDIZATION (FISH)
  • 2015-08-31. Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome in NATURE GENETICS
  • 2014-03-11. CTCF: an architectural protein bridging genome topology and function in NATURE REVIEWS GENETICS
  • 2005-09-27. Distribution of different phosphorylated forms of RNA polymerase II in relation to Cajal and PML bodies in human cells: an ultrastructural study in HISTOCHEMISTRY AND CELL BIOLOGY
  • 2002. Monte Carlo Simulation in Statistical Physics, An Introduction in NONE
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  • 2013-04-25. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions in GENOME BIOLOGY
  • 2016-01-13. Super-resolution imaging reveals distinct chromatin folding for different epigenetic states in NATURE
  • 2015-03-11. Three-dimensional genome architecture: players and mechanisms in NATURE REVIEWS MOLECULAR CELL BIOLOGY
  • 2009-10-11. High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology in NATURE METHODS
  • 2009-12-13. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells in NATURE GENETICS
  • 2000-12. Dynamic binding of histone H1 to chromatin in living cells in NATURE
  • 2010. Nuclear Architecture in Stem Cells in THE CELL BIOLOGY OF STEM CELLS
  • 2012-03-04. Fast gapped-read alignment with Bowtie 2 in NATURE METHODS
  • 2016-03-31. Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models in GENOME BIOLOGY
  • 2000-04. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells in NATURE GENETICS
  • 2007-07-01. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells in NATURE
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  • 2007-11-25. Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells in NATURE CELL BIOLOGY
  • 2012-03-01. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nsmb.3402

    DOI

    http://dx.doi.org/10.1038/nsmb.3402

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1085051627

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/28436944


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    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nsmb.3402'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nsmb.3402'


     

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