Ontology type: schema:ScholarlyArticle
2010-06-20
AUTHORSOliver Bell, Michaela Schwaiger, Edward J Oakeley, Florian Lienert, Christian Beisel, Michael B Stadler, Dirk Schübeler
ABSTRACTAccessibility may play a key regulatory role affecting factors that bind to or target DNA. Using accessibility to DNA methyltransferases, the genome-wide profile of DNA accessibility in Drosophila melanogaster is presented and analyzed, indicating correlations with PcG repression, H4K16 acetylation and replication initiation.
PAGES894-900
http://scigraph.springernature.com/pub.10.1038/nsmb.1825
DOIhttp://dx.doi.org/10.1038/nsmb.1825
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1023608561
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/20562853
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Acetylation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chromosomes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA Replication",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Drosophila melanogaster",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Insect",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Histones",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polycomb-Group Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Repressor Proteins",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.).",
"id": "http://www.grid.ac/institutes/grid.168010.e",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.)."
],
"type": "Organization"
},
"familyName": "Bell",
"givenName": "Oliver",
"id": "sg:person.01127533273.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01127533273.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.).",
"id": "http://www.grid.ac/institutes/grid.168010.e",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.)."
],
"type": "Organization"
},
"familyName": "Schwaiger",
"givenName": "Michaela",
"id": "sg:person.01257230552.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01257230552.35"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.).",
"id": "http://www.grid.ac/institutes/grid.168010.e",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"Present addresses: Howard Hughes Medical Institute and the Department of Pathology, Stanford University, Stanford, California, USA (O.B.), Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria (M.S.) and Novartis Institutes for BioMedical Research, BMD/Genome Technologies and Novartis Pharma AG, Basel, Switzerland (E.J.O.)."
],
"type": "Organization"
},
"familyName": "Oakeley",
"givenName": "Edward J",
"id": "sg:person.01352511336.36",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01352511336.36"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"id": "http://www.grid.ac/institutes/grid.482245.d",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Lienert",
"givenName": "Florian",
"id": "sg:person.01272460040.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272460040.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biosystems Science and Engineering, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich, Basel, Switzerland",
"id": "http://www.grid.ac/institutes/grid.5801.c",
"name": [
"Department of Biosystems Science and Engineering, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Beisel",
"givenName": "Christian",
"id": "sg:person.0627076133.14",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0627076133.14"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"id": "http://www.grid.ac/institutes/grid.482245.d",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Stadler",
"givenName": "Michael B",
"id": "sg:person.01042003040.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01042003040.35"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland",
"id": "http://www.grid.ac/institutes/grid.482245.d",
"name": [
"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland"
],
"type": "Organization"
},
"familyName": "Sch\u00fcbeler",
"givenName": "Dirk",
"id": "sg:person.01067322222.50",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01067322222.50"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/ng1817",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026324467",
"https://doi.org/10.1038/ng1817"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1400",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038197264",
"https://doi.org/10.1038/ng1400"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35065132",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020526163",
"https://doi.org/10.1038/35065132"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature02694",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040566175",
"https://doi.org/10.1038/nature02694"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth890",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012018664",
"https://doi.org/10.1038/nmeth890"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncb1663",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002252559",
"https://doi.org/10.1038/ncb1663"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01411",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034943207",
"https://doi.org/10.1038/nature01411"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-005-1508-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011155639",
"https://doi.org/10.1007/s10577-005-1508-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/15551",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041454322",
"https://doi.org/10.1038/15551"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35065138",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018164085",
"https://doi.org/10.1038/35065138"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncb1637",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029005861",
"https://doi.org/10.1038/ncb1637"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1598",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046759532",
"https://doi.org/10.1038/ng1598"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2009-10-3-r25",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049583368",
"https://doi.org/10.1186/gb-2009-10-3-r25"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncb1787",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005538911",
"https://doi.org/10.1038/ncb1787"
],
"type": "CreativeWork"
}
],
"datePublished": "2010-06-20",
"datePublishedReg": "2010-06-20",
"description": "Accessibility may play a key regulatory role affecting factors that bind to or target DNA. Using accessibility to DNA methyltransferases, the genome-wide profile of DNA accessibility in Drosophila melanogaster is presented and analyzed, indicating correlations with PcG repression, H4K16 acetylation and replication initiation.",
"genre": "article",
"id": "sg:pub.10.1038/nsmb.1825",
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.3771136",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1295033",
"issn": [
"1545-9993",
"2331-365X"
],
"name": "Nature Structural & Molecular Biology",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "7",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "17"
}
],
"keywords": [
"PcG repression",
"genome-wide profiles",
"key regulatory role",
"Drosophila genome",
"replication timing",
"DNA accessibility",
"replication initiation",
"Drosophila melanogaster",
"DNA methyltransferases",
"regulatory role",
"repression",
"acetylation",
"melanogaster",
"methyltransferases",
"genome",
"DNA",
"accessibility",
"role",
"initiation",
"timing",
"factors",
"profile",
"correlation"
],
"name": "Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing",
"pagination": "894-900",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1023608561"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nsmb.1825"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"20562853"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nsmb.1825",
"https://app.dimensions.ai/details/publication/pub.1023608561"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T16:58",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_515.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/nsmb.1825"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nsmb.1825'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nsmb.1825'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nsmb.1825'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nsmb.1825'
This table displays all metadata directly associated to this object as RDF triples.
231 TRIPLES
21 PREDICATES
72 URIs
50 LITERALS
17 BLANK NODES