Improved visualization of protein consensus sequences by iceLogo View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2009-11

AUTHORS

Niklaas Colaert, Kenny Helsens, Lennart Martens, Joël Vandekerckhove, Kris Gevaert

ABSTRACT

N/A

PAGES

786-787

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nmeth1109-786

DOI

http://dx.doi.org/10.1038/nmeth1109-786

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1002619452

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/19876014


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "author": [
      {
        "affiliation": {
          "alternateName": "Ghent University", 
          "id": "https://www.grid.ac/institutes/grid.5342.0", 
          "name": [
            "Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.", 
            "Department of Biochemistry, Ghent University, Ghent, Belgium."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Colaert", 
        "givenName": "Niklaas", 
        "id": "sg:person.01161143302.22", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01161143302.22"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Ghent University", 
          "id": "https://www.grid.ac/institutes/grid.5342.0", 
          "name": [
            "Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.", 
            "Department of Biochemistry, Ghent University, Ghent, Belgium."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Helsens", 
        "givenName": "Kenny", 
        "id": "sg:person.01275371702.60", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01275371702.60"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "European Molecular Biology Laboratory Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Martens", 
        "givenName": "Lennart", 
        "id": "sg:person.01073060433.71", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073060433.71"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Ghent University", 
          "id": "https://www.grid.ac/institutes/grid.5342.0", 
          "name": [
            "Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.", 
            "Department of Biochemistry, Ghent University, Ghent, Belgium."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Vandekerckhove", 
        "givenName": "Jo\u00ebl", 
        "id": "sg:person.01036516654.03", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036516654.03"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Ghent University", 
          "id": "https://www.grid.ac/institutes/grid.5342.0", 
          "name": [
            "Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.", 
            "Department of Biochemistry, Ghent University, Ghent, Belgium."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gevaert", 
        "givenName": "Kris", 
        "id": "sg:person.01011027111.45", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01011027111.45"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1101/gr.849004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016890117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm998", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021088039"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm977", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032833514"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/mcp.m800060-mcp200", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037462292"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0901931106", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040406551"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0901931106", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040406551"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/18.20.6097", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041886714"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2009-11", 
    "datePublishedReg": "2009-11-01", 
    "genre": "non_research_article", 
    "id": "sg:pub.10.1038/nmeth1109-786", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1033763", 
        "issn": [
          "1548-7091", 
          "1548-7105"
        ], 
        "name": "Nature Methods", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "11", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "6"
      }
    ], 
    "name": "Improved visualization of protein consensus sequences by iceLogo", 
    "pagination": "786-787", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "0c78a7cf6c6a53f2ad1ba2fe99f553ef6d7050b6785c532719fe2d483bbe090a"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "19876014"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101215604"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/nmeth1109-786"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1002619452"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/nmeth1109-786", 
      "https://app.dimensions.ai/details/publication/pub.1002619452"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T22:19", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000421.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://www.nature.com/articles/nmeth1109-786"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth1109-786'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth1109-786'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth1109-786'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth1109-786'


 

This table displays all metadata directly associated to this object as RDF triples.

110 TRIPLES      19 PREDICATES      32 URIs      20 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/nmeth1109-786 schema:author N8e77b1a221b14157a110548b7fd9e741
2 schema:citation https://doi.org/10.1073/pnas.0901931106
3 https://doi.org/10.1074/mcp.m800060-mcp200
4 https://doi.org/10.1093/nar/18.20.6097
5 https://doi.org/10.1093/nar/gkm977
6 https://doi.org/10.1093/nar/gkm998
7 https://doi.org/10.1101/gr.849004
8 schema:datePublished 2009-11
9 schema:datePublishedReg 2009-11-01
10 schema:genre non_research_article
11 schema:inLanguage en
12 schema:isAccessibleForFree false
13 schema:isPartOf N438d4093122145808ff4bc0e4347ed03
14 Nfa31da26bf5048a38d4efe0284c14fcf
15 sg:journal.1033763
16 schema:name Improved visualization of protein consensus sequences by iceLogo
17 schema:pagination 786-787
18 schema:productId N2eef2a19f4c647e982ffeef962394af7
19 N3e0a137ff3044cee9a68f4fd28987266
20 N5b5ef1c5fdf141958b2068b780a04825
21 N5eeceead499b4b0fb7f555663da3289e
22 Nf355934c091c4f0c872931f6ed50170f
23 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002619452
24 https://doi.org/10.1038/nmeth1109-786
25 schema:sdDatePublished 2019-04-10T22:19
26 schema:sdLicense https://scigraph.springernature.com/explorer/license/
27 schema:sdPublisher Nfee99ec355004444b1c03fc8a4902d49
28 schema:url http://www.nature.com/articles/nmeth1109-786
29 sgo:license sg:explorer/license/
30 sgo:sdDataset articles
31 rdf:type schema:ScholarlyArticle
32 N16fec88393f24ec580659aeb60365538 rdf:first sg:person.01011027111.45
33 rdf:rest rdf:nil
34 N2eef2a19f4c647e982ffeef962394af7 schema:name doi
35 schema:value 10.1038/nmeth1109-786
36 rdf:type schema:PropertyValue
37 N3e0a137ff3044cee9a68f4fd28987266 schema:name pubmed_id
38 schema:value 19876014
39 rdf:type schema:PropertyValue
40 N438d4093122145808ff4bc0e4347ed03 schema:volumeNumber 6
41 rdf:type schema:PublicationVolume
42 N5b5ef1c5fdf141958b2068b780a04825 schema:name nlm_unique_id
43 schema:value 101215604
44 rdf:type schema:PropertyValue
45 N5eeceead499b4b0fb7f555663da3289e schema:name dimensions_id
46 schema:value pub.1002619452
47 rdf:type schema:PropertyValue
48 N8e77b1a221b14157a110548b7fd9e741 rdf:first sg:person.01161143302.22
49 rdf:rest Nf5d7cf1258024eff8db8a45edd556fff
50 Naae2bf54f1d14ac68dda02609e50dd85 rdf:first sg:person.01036516654.03
51 rdf:rest N16fec88393f24ec580659aeb60365538
52 Ne11e34ff7b4942f3bc1692f1f8183029 rdf:first sg:person.01073060433.71
53 rdf:rest Naae2bf54f1d14ac68dda02609e50dd85
54 Nf355934c091c4f0c872931f6ed50170f schema:name readcube_id
55 schema:value 0c78a7cf6c6a53f2ad1ba2fe99f553ef6d7050b6785c532719fe2d483bbe090a
56 rdf:type schema:PropertyValue
57 Nf5d7cf1258024eff8db8a45edd556fff rdf:first sg:person.01275371702.60
58 rdf:rest Ne11e34ff7b4942f3bc1692f1f8183029
59 Nfa31da26bf5048a38d4efe0284c14fcf schema:issueNumber 11
60 rdf:type schema:PublicationIssue
61 Nfee99ec355004444b1c03fc8a4902d49 schema:name Springer Nature - SN SciGraph project
62 rdf:type schema:Organization
63 sg:journal.1033763 schema:issn 1548-7091
64 1548-7105
65 schema:name Nature Methods
66 rdf:type schema:Periodical
67 sg:person.01011027111.45 schema:affiliation https://www.grid.ac/institutes/grid.5342.0
68 schema:familyName Gevaert
69 schema:givenName Kris
70 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01011027111.45
71 rdf:type schema:Person
72 sg:person.01036516654.03 schema:affiliation https://www.grid.ac/institutes/grid.5342.0
73 schema:familyName Vandekerckhove
74 schema:givenName Joël
75 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036516654.03
76 rdf:type schema:Person
77 sg:person.01073060433.71 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
78 schema:familyName Martens
79 schema:givenName Lennart
80 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01073060433.71
81 rdf:type schema:Person
82 sg:person.01161143302.22 schema:affiliation https://www.grid.ac/institutes/grid.5342.0
83 schema:familyName Colaert
84 schema:givenName Niklaas
85 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01161143302.22
86 rdf:type schema:Person
87 sg:person.01275371702.60 schema:affiliation https://www.grid.ac/institutes/grid.5342.0
88 schema:familyName Helsens
89 schema:givenName Kenny
90 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01275371702.60
91 rdf:type schema:Person
92 https://doi.org/10.1073/pnas.0901931106 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040406551
93 rdf:type schema:CreativeWork
94 https://doi.org/10.1074/mcp.m800060-mcp200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037462292
95 rdf:type schema:CreativeWork
96 https://doi.org/10.1093/nar/18.20.6097 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041886714
97 rdf:type schema:CreativeWork
98 https://doi.org/10.1093/nar/gkm977 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032833514
99 rdf:type schema:CreativeWork
100 https://doi.org/10.1093/nar/gkm998 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021088039
101 rdf:type schema:CreativeWork
102 https://doi.org/10.1101/gr.849004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016890117
103 rdf:type schema:CreativeWork
104 https://www.grid.ac/institutes/grid.225360.0 schema:alternateName European Bioinformatics Institute
105 schema:name European Molecular Biology Laboratory Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
106 rdf:type schema:Organization
107 https://www.grid.ac/institutes/grid.5342.0 schema:alternateName Ghent University
108 schema:name Department of Biochemistry, Ghent University, Ghent, Belgium.
109 Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.
110 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...