PhymmBL expanded: confidence scores, custom databases, parallelization and more View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-05

AUTHORS

Arthur Brady, Steven Salzberg

ABSTRACT

N/A

PAGES

367

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nmeth0511-367

DOI

http://dx.doi.org/10.1038/nmeth0511-367

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1022956952

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21527926


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Maryland, College Park", 
          "id": "https://www.grid.ac/institutes/grid.164295.d", 
          "name": [
            "Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brady", 
        "givenName": "Arthur", 
        "id": "sg:person.01025032714.70", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01025032714.70"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Maryland, College Park", 
          "id": "https://www.grid.ac/institutes/grid.164295.d", 
          "name": [
            "Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Salzberg", 
        "givenName": "Steven", 
        "id": "sg:person.01223441713.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01223441713.02"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/nmeth.1358", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008886215", 
          "https://doi.org/10.1038/nmeth.1358"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.1358", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008886215", 
          "https://doi.org/10.1038/nmeth.1358"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/25.17.3389", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047265454"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1123360", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062453436"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2011-05", 
    "datePublishedReg": "2011-05-01", 
    "genre": "non_research_article", 
    "id": "sg:pub.10.1038/nmeth0511-367", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2529453", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2529425", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2519905", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2545461", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1033763", 
        "issn": [
          "1548-7091", 
          "1548-7105"
        ], 
        "name": "Nature Methods", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "5", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "8"
      }
    ], 
    "name": "PhymmBL expanded: confidence scores, custom databases, parallelization and more", 
    "pagination": "367", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "6d5f4cda740542e250502d35648f0bb3a49b3c9bcf305a60392c7d0d3a9447c8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "21527926"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101215604"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/nmeth0511-367"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1022956952"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/nmeth0511-367", 
      "https://app.dimensions.ai/details/publication/pub.1022956952"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T20:36", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8684_00000437.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://www.nature.com/articles/nmeth0511-367"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth0511-367'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth0511-367'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth0511-367'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth0511-367'


 

This table displays all metadata directly associated to this object as RDF triples.

85 TRIPLES      19 PREDICATES      29 URIs      20 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/nmeth0511-367 schema:author Nea8f5e7dca184b7cbd9aa94419e4b53b
2 schema:citation sg:pub.10.1038/nmeth.1358
3 https://doi.org/10.1093/nar/25.17.3389
4 https://doi.org/10.1126/science.1123360
5 schema:datePublished 2011-05
6 schema:datePublishedReg 2011-05-01
7 schema:genre non_research_article
8 schema:inLanguage en
9 schema:isAccessibleForFree true
10 schema:isPartOf N4148706fe8fc42c6b82a6d6d06f987fc
11 Nd60e52159e2640ce8c744b44d17fda73
12 sg:journal.1033763
13 schema:name PhymmBL expanded: confidence scores, custom databases, parallelization and more
14 schema:pagination 367
15 schema:productId N4e09f8f4ab2847e3baa2c8a6aafd453a
16 N9866741a23d9488fbf7aa56531cdf77d
17 Nbc208d88053c41a79d2fcc427b23a276
18 Nd416e9cdb80c4568927725e8b531be65
19 Nef01e201dcc54a828db65352186c0c7b
20 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022956952
21 https://doi.org/10.1038/nmeth0511-367
22 schema:sdDatePublished 2019-04-10T20:36
23 schema:sdLicense https://scigraph.springernature.com/explorer/license/
24 schema:sdPublisher N35449f0f37a245d79340be936c5676d2
25 schema:url https://www.nature.com/articles/nmeth0511-367
26 sgo:license sg:explorer/license/
27 sgo:sdDataset articles
28 rdf:type schema:ScholarlyArticle
29 N35449f0f37a245d79340be936c5676d2 schema:name Springer Nature - SN SciGraph project
30 rdf:type schema:Organization
31 N4148706fe8fc42c6b82a6d6d06f987fc schema:issueNumber 5
32 rdf:type schema:PublicationIssue
33 N4e09f8f4ab2847e3baa2c8a6aafd453a schema:name dimensions_id
34 schema:value pub.1022956952
35 rdf:type schema:PropertyValue
36 N6bf8ef55e8664e02a46b8cb4c5bda163 rdf:first sg:person.01223441713.02
37 rdf:rest rdf:nil
38 N9866741a23d9488fbf7aa56531cdf77d schema:name pubmed_id
39 schema:value 21527926
40 rdf:type schema:PropertyValue
41 Nbc208d88053c41a79d2fcc427b23a276 schema:name nlm_unique_id
42 schema:value 101215604
43 rdf:type schema:PropertyValue
44 Nd416e9cdb80c4568927725e8b531be65 schema:name doi
45 schema:value 10.1038/nmeth0511-367
46 rdf:type schema:PropertyValue
47 Nd60e52159e2640ce8c744b44d17fda73 schema:volumeNumber 8
48 rdf:type schema:PublicationVolume
49 Nea8f5e7dca184b7cbd9aa94419e4b53b rdf:first sg:person.01025032714.70
50 rdf:rest N6bf8ef55e8664e02a46b8cb4c5bda163
51 Nef01e201dcc54a828db65352186c0c7b schema:name readcube_id
52 schema:value 6d5f4cda740542e250502d35648f0bb3a49b3c9bcf305a60392c7d0d3a9447c8
53 rdf:type schema:PropertyValue
54 sg:grant.2519905 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0511-367
55 rdf:type schema:MonetaryGrant
56 sg:grant.2529425 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0511-367
57 rdf:type schema:MonetaryGrant
58 sg:grant.2529453 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0511-367
59 rdf:type schema:MonetaryGrant
60 sg:grant.2545461 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0511-367
61 rdf:type schema:MonetaryGrant
62 sg:journal.1033763 schema:issn 1548-7091
63 1548-7105
64 schema:name Nature Methods
65 rdf:type schema:Periodical
66 sg:person.01025032714.70 schema:affiliation https://www.grid.ac/institutes/grid.164295.d
67 schema:familyName Brady
68 schema:givenName Arthur
69 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01025032714.70
70 rdf:type schema:Person
71 sg:person.01223441713.02 schema:affiliation https://www.grid.ac/institutes/grid.164295.d
72 schema:familyName Salzberg
73 schema:givenName Steven
74 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01223441713.02
75 rdf:type schema:Person
76 sg:pub.10.1038/nmeth.1358 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008886215
77 https://doi.org/10.1038/nmeth.1358
78 rdf:type schema:CreativeWork
79 https://doi.org/10.1093/nar/25.17.3389 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047265454
80 rdf:type schema:CreativeWork
81 https://doi.org/10.1126/science.1123360 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062453436
82 rdf:type schema:CreativeWork
83 https://www.grid.ac/institutes/grid.164295.d schema:alternateName University of Maryland, College Park
84 schema:name Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA.
85 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...