A method and server for predicting damaging missense mutations View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nmeth0410-248

DOI

http://dx.doi.org/10.1038/nmeth0410-248

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1007489634

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/20354512


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "author": [
      {
        "affiliation": {
          "name": [
            "Division of Genetics, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Adzhubei", 
        "givenName": "Ivan A", 
        "id": "sg:person.01322532503.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01322532503.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Max Planck Institute for Developmental Biology", 
          "id": "https://www.grid.ac/institutes/grid.419495.4", 
          "name": [
            "Department of Biochemistry, Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schmidt", 
        "givenName": "Steffen", 
        "id": "sg:person.01173154116.48", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01173154116.48"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Harvard University", 
          "id": "https://www.grid.ac/institutes/grid.38142.3c", 
          "name": [
            "Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Peshkin", 
        "givenName": "Leonid", 
        "id": "sg:person.01110626707.45", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01110626707.45"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Engelhardt Institute of Molecular Biology", 
          "id": "https://www.grid.ac/institutes/grid.418899.5", 
          "name": [
            "Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ramensky", 
        "givenName": "Vasily E", 
        "id": "sg:person.01244347165.88", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01244347165.88"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Michigan\u2013Ann Arbor", 
          "id": "https://www.grid.ac/institutes/grid.214458.e", 
          "name": [
            "Life Sciences Institute and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gerasimova", 
        "givenName": "Anna", 
        "id": "sg:person.01027576225.25", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01027576225.25"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.4709.a", 
          "name": [
            "European Molecular Biology Laboratory, Heidelberg, Germany."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bork", 
        "givenName": "Peer", 
        "id": "sg:person.01240760565.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01240760565.42"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Michigan\u2013Ann Arbor", 
          "id": "https://www.grid.ac/institutes/grid.214458.e", 
          "name": [
            "Life Sciences Institute and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kondrashov", 
        "givenName": "Alexey S", 
        "id": "sg:person.01134640327.47", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01134640327.47"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Division of Genetics, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sunyaev", 
        "givenName": "Shamil R", 
        "id": "sg:person.01310516710.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01310516710.30"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1093/nar/gkg509", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002198958"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-7-166", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008763878", 
          "https://doi.org/10.1186/1471-2105-7-166"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btn435", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027819385"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl423", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032155951"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkf493", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043756780"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pgen.1000281", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053129988"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2010-04", 
    "datePublishedReg": "2010-04-01", 
    "genre": "non_research_article", 
    "id": "sg:pub.10.1038/nmeth0410-248", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2551829", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2519315", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1033763", 
        "issn": [
          "1548-7091", 
          "1548-7105"
        ], 
        "name": "Nature Methods", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "7"
      }
    ], 
    "name": "A method and server for predicting damaging missense mutations", 
    "pagination": "248", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "23ac85a3a8259c34bf9609302f3f3558bd6863ce3745b7536b95361e332fe2c8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "20354512"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101215604"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/nmeth0410-248"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1007489634"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/nmeth0410-248", 
      "https://app.dimensions.ai/details/publication/pub.1007489634"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:15", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000348_0000000348/records_54297_00000000.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://www.nature.com/articles/nmeth0410-248"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth0410-248'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth0410-248'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth0410-248'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth0410-248'


 

This table displays all metadata directly associated to this object as RDF triples.

148 TRIPLES      19 PREDICATES      32 URIs      20 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/nmeth0410-248 schema:author Ncccb876d7f3c4ce3aa08e6a842bdd2a0
2 schema:citation sg:pub.10.1186/1471-2105-7-166
3 https://doi.org/10.1093/bioinformatics/btl423
4 https://doi.org/10.1093/bioinformatics/btn435
5 https://doi.org/10.1093/nar/gkf493
6 https://doi.org/10.1093/nar/gkg509
7 https://doi.org/10.1371/journal.pgen.1000281
8 schema:datePublished 2010-04
9 schema:datePublishedReg 2010-04-01
10 schema:genre non_research_article
11 schema:inLanguage en
12 schema:isAccessibleForFree true
13 schema:isPartOf N14c2e7c04fd74b4680e878498c3b6399
14 Nc925beaa51f248a9a6e5fc52398d9804
15 sg:journal.1033763
16 schema:name A method and server for predicting damaging missense mutations
17 schema:pagination 248
18 schema:productId N15ec52ba29ed4ba0a36f6bdb805ce6c9
19 N39f6249852514518b336bdaf2e34abed
20 N64c2d32462c44c049368912e4bf6d32c
21 Nc0d231a279794e53b930300989418e5a
22 Ndd0cc1b3dfac4066a14e8c0cd3789f1a
23 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007489634
24 https://doi.org/10.1038/nmeth0410-248
25 schema:sdDatePublished 2019-04-11T10:15
26 schema:sdLicense https://scigraph.springernature.com/explorer/license/
27 schema:sdPublisher Ne27207a6f4e84c74b8ee922befe6c445
28 schema:url https://www.nature.com/articles/nmeth0410-248
29 sgo:license sg:explorer/license/
30 sgo:sdDataset articles
31 rdf:type schema:ScholarlyArticle
32 N14c2e7c04fd74b4680e878498c3b6399 schema:volumeNumber 7
33 rdf:type schema:PublicationVolume
34 N155a656041174dadb20a68539b786cf8 rdf:first sg:person.01173154116.48
35 rdf:rest N8dc7b7b8cce54b28bb30f4f1847954e8
36 N15ec52ba29ed4ba0a36f6bdb805ce6c9 schema:name pubmed_id
37 schema:value 20354512
38 rdf:type schema:PropertyValue
39 N218c348b1b8d4cf6906495c4bdba5983 schema:name Division of Genetics, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
40 rdf:type schema:Organization
41 N39f6249852514518b336bdaf2e34abed schema:name nlm_unique_id
42 schema:value 101215604
43 rdf:type schema:PropertyValue
44 N485dd867ffef4f21896662762e3fceca rdf:first sg:person.01027576225.25
45 rdf:rest N8033df27581840379e6d35ba9ffda58b
46 N58068ffe558a42d987c0b3c1717318ca rdf:first sg:person.01244347165.88
47 rdf:rest N485dd867ffef4f21896662762e3fceca
48 N64c2d32462c44c049368912e4bf6d32c schema:name dimensions_id
49 schema:value pub.1007489634
50 rdf:type schema:PropertyValue
51 N8033df27581840379e6d35ba9ffda58b rdf:first sg:person.01240760565.42
52 rdf:rest Na168a85a5a8243709b2e754a17dab174
53 N8dc7b7b8cce54b28bb30f4f1847954e8 rdf:first sg:person.01110626707.45
54 rdf:rest N58068ffe558a42d987c0b3c1717318ca
55 N9339501acd654cb2b5ca44075ecad66d rdf:first sg:person.01310516710.30
56 rdf:rest rdf:nil
57 Na168a85a5a8243709b2e754a17dab174 rdf:first sg:person.01134640327.47
58 rdf:rest N9339501acd654cb2b5ca44075ecad66d
59 Nc0d231a279794e53b930300989418e5a schema:name readcube_id
60 schema:value 23ac85a3a8259c34bf9609302f3f3558bd6863ce3745b7536b95361e332fe2c8
61 rdf:type schema:PropertyValue
62 Nc925beaa51f248a9a6e5fc52398d9804 schema:issueNumber 4
63 rdf:type schema:PublicationIssue
64 Ncccb876d7f3c4ce3aa08e6a842bdd2a0 rdf:first sg:person.01322532503.51
65 rdf:rest N155a656041174dadb20a68539b786cf8
66 Nd22f2b9f71c8400b923a912d45f546d1 schema:name Division of Genetics, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
67 rdf:type schema:Organization
68 Ndd0cc1b3dfac4066a14e8c0cd3789f1a schema:name doi
69 schema:value 10.1038/nmeth0410-248
70 rdf:type schema:PropertyValue
71 Ne27207a6f4e84c74b8ee922befe6c445 schema:name Springer Nature - SN SciGraph project
72 rdf:type schema:Organization
73 sg:grant.2519315 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0410-248
74 rdf:type schema:MonetaryGrant
75 sg:grant.2551829 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth0410-248
76 rdf:type schema:MonetaryGrant
77 sg:journal.1033763 schema:issn 1548-7091
78 1548-7105
79 schema:name Nature Methods
80 rdf:type schema:Periodical
81 sg:person.01027576225.25 schema:affiliation https://www.grid.ac/institutes/grid.214458.e
82 schema:familyName Gerasimova
83 schema:givenName Anna
84 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01027576225.25
85 rdf:type schema:Person
86 sg:person.01110626707.45 schema:affiliation https://www.grid.ac/institutes/grid.38142.3c
87 schema:familyName Peshkin
88 schema:givenName Leonid
89 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01110626707.45
90 rdf:type schema:Person
91 sg:person.01134640327.47 schema:affiliation https://www.grid.ac/institutes/grid.214458.e
92 schema:familyName Kondrashov
93 schema:givenName Alexey S
94 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01134640327.47
95 rdf:type schema:Person
96 sg:person.01173154116.48 schema:affiliation https://www.grid.ac/institutes/grid.419495.4
97 schema:familyName Schmidt
98 schema:givenName Steffen
99 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01173154116.48
100 rdf:type schema:Person
101 sg:person.01240760565.42 schema:affiliation https://www.grid.ac/institutes/grid.4709.a
102 schema:familyName Bork
103 schema:givenName Peer
104 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01240760565.42
105 rdf:type schema:Person
106 sg:person.01244347165.88 schema:affiliation https://www.grid.ac/institutes/grid.418899.5
107 schema:familyName Ramensky
108 schema:givenName Vasily E
109 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01244347165.88
110 rdf:type schema:Person
111 sg:person.01310516710.30 schema:affiliation N218c348b1b8d4cf6906495c4bdba5983
112 schema:familyName Sunyaev
113 schema:givenName Shamil R
114 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01310516710.30
115 rdf:type schema:Person
116 sg:person.01322532503.51 schema:affiliation Nd22f2b9f71c8400b923a912d45f546d1
117 schema:familyName Adzhubei
118 schema:givenName Ivan A
119 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01322532503.51
120 rdf:type schema:Person
121 sg:pub.10.1186/1471-2105-7-166 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008763878
122 https://doi.org/10.1186/1471-2105-7-166
123 rdf:type schema:CreativeWork
124 https://doi.org/10.1093/bioinformatics/btl423 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032155951
125 rdf:type schema:CreativeWork
126 https://doi.org/10.1093/bioinformatics/btn435 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027819385
127 rdf:type schema:CreativeWork
128 https://doi.org/10.1093/nar/gkf493 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043756780
129 rdf:type schema:CreativeWork
130 https://doi.org/10.1093/nar/gkg509 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002198958
131 rdf:type schema:CreativeWork
132 https://doi.org/10.1371/journal.pgen.1000281 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053129988
133 rdf:type schema:CreativeWork
134 https://www.grid.ac/institutes/grid.214458.e schema:alternateName University of Michigan–Ann Arbor
135 schema:name Life Sciences Institute and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, USA.
136 rdf:type schema:Organization
137 https://www.grid.ac/institutes/grid.38142.3c schema:alternateName Harvard University
138 schema:name Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA.
139 rdf:type schema:Organization
140 https://www.grid.ac/institutes/grid.418899.5 schema:alternateName Engelhardt Institute of Molecular Biology
141 schema:name Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.
142 rdf:type schema:Organization
143 https://www.grid.ac/institutes/grid.419495.4 schema:alternateName Max Planck Institute for Developmental Biology
144 schema:name Department of Biochemistry, Max Planck Institute for Developmental Biology, Tübingen, Germany.
145 rdf:type schema:Organization
146 https://www.grid.ac/institutes/grid.4709.a schema:alternateName European Molecular Biology Laboratory
147 schema:name European Molecular Biology Laboratory, Heidelberg, Germany.
148 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...