Ontology type: schema:ScholarlyArticle Open Access: True
2017-06-19
AUTHORSBrandon Frenz, Alexandra C Walls, Edward H Egelman, David Veesler, Frank DiMaio
ABSTRACTRosettaES, an algorithm that uses a fragment-based sampling strategy, improves macromolecular structure modeling from cryo-EM data at 3–5-Å resolution.
PAGES797-800
http://scigraph.springernature.com/pub.10.1038/nmeth.4340
DOIhttp://dx.doi.org/10.1038/nmeth.4340
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1086071524
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/28628127
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/10",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Technology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Algorithms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cryoelectron Microscopy",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Data Interpretation, Statistical",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Image Enhancement",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Imaging, Three-Dimensional",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Molecular Imaging",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Pattern Recognition, Automated",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Reproducibility of Results",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sample Size",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sensitivity and Specificity",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Software",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Specimen Handling",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Biochemistry, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Biochemistry, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "Frenz",
"givenName": "Brandon",
"id": "sg:person.01164376701.71",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01164376701.71"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Biochemistry, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "Walls",
"givenName": "Alexandra C",
"id": "sg:person.0600455253.59",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0600455253.59"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, Virginia, USA",
"id": "http://www.grid.ac/institutes/grid.27755.32",
"name": [
"Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, Virginia, USA"
],
"type": "Organization"
},
"familyName": "Egelman",
"givenName": "Edward H",
"id": "sg:person.0735705040.25",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735705040.25"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Biochemistry, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "Veesler",
"givenName": "David",
"id": "sg:person.01002414777.95",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01002414777.95"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Biochemistry, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "DiMaio",
"givenName": "Frank",
"id": "sg:person.0660477641.01",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0660477641.01"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nmeth.3287",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052795485",
"https://doi.org/10.1038/nmeth.3287"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.3054",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021405869",
"https://doi.org/10.1038/nsmb.3054"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.3293",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018950972",
"https://doi.org/10.1038/nsmb.3293"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature17200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014536983",
"https://doi.org/10.1038/nature17200"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature16988",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050236601",
"https://doi.org/10.1038/nature16988"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.3286",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015110469",
"https://doi.org/10.1038/nmeth.3286"
],
"type": "CreativeWork"
}
],
"datePublished": "2017-06-19",
"datePublishedReg": "2017-06-19",
"description": "RosettaES, an algorithm that uses a fragment-based sampling strategy, improves macromolecular structure modeling from cryo-EM data at 3\u20135-\u00c5 resolution.",
"genre": "article",
"id": "sg:pub.10.1038/nmeth.4340",
"inLanguage": "en",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.2683880",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.7027576",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.5503638",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.2511305",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1033763",
"issn": [
"1548-7091",
"1548-7105"
],
"name": "Nature Methods",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "8",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "14"
}
],
"keywords": [
"macromolecular structure",
"cryo-EM data",
"cryo-EM maps",
"structure",
"strategies",
"resolution",
"sampling strategy",
"interpretation",
"data",
"maps",
"algorithm"
],
"name": "RosettaES: a sampling strategy enabling automated interpretation of difficult cryo-EM maps",
"pagination": "797-800",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1086071524"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nmeth.4340"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"28628127"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nmeth.4340",
"https://app.dimensions.ai/details/publication/pub.1086071524"
],
"sdDataset": "articles",
"sdDatePublished": "2022-06-01T22:16",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220601/entities/gbq_results/article/article_734.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/nmeth.4340"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth.4340'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth.4340'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth.4340'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth.4340'
This table displays all metadata directly associated to this object as RDF triples.
188 TRIPLES
22 PREDICATES
56 URIs
41 LITERALS
19 BLANK NODES