Ontology type: schema:ScholarlyArticle Open Access: True
2015-03-09
AUTHORSDaehwan Kim, Ben Langmead, Steven L Salzberg
ABSTRACTHISAT (hierarchical indexing for spliced alignment of transcripts) uses global and local indices for fast, sensitive alignment with small memory requirements.
PAGES357-360
http://scigraph.springernature.com/pub.10.1038/nmeth.3317
DOIhttp://dx.doi.org/10.1038/nmeth.3317
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1005140994
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/25751142
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/10",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Technology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Limit of Detection",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Pseudogenes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Alignment",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, RNA",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA",
"id": "http://www.grid.ac/institutes/grid.21107.35",
"name": [
"Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA",
"Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA"
],
"type": "Organization"
},
"familyName": "Kim",
"givenName": "Daehwan",
"id": "sg:person.0706332513.20",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0706332513.20"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA",
"id": "http://www.grid.ac/institutes/grid.21107.35",
"name": [
"Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA",
"Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA",
"Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA"
],
"type": "Organization"
},
"familyName": "Langmead",
"givenName": "Ben",
"id": "sg:person.011763134307.48",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011763134307.48"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA",
"id": "http://www.grid.ac/institutes/grid.21107.35",
"name": [
"Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA",
"Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA",
"Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA"
],
"type": "Organization"
},
"familyName": "Salzberg",
"givenName": "Steven L",
"id": "sg:person.01223441713.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01223441713.02"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nmeth.1923",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006541515",
"https://doi.org/10.1038/nmeth.1923"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature07759",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010358988",
"https://doi.org/10.1038/nature07759"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2013-14-4-r36",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015459845",
"https://doi.org/10.1186/gb-2013-14-4-r36"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nprot.2012.016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030124536",
"https://doi.org/10.1038/nprot.2012.016"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1613",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009798986",
"https://doi.org/10.1038/nmeth.1613"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2011-12-8-r72",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006381787",
"https://doi.org/10.1186/gb-2011-12-8-r72"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.2722",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031472606",
"https://doi.org/10.1038/nmeth.2722"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1226",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045381177",
"https://doi.org/10.1038/nmeth.1226"
],
"type": "CreativeWork"
}
],
"datePublished": "2015-03-09",
"datePublishedReg": "2015-03-09",
"description": "HISAT (hierarchical indexing for spliced alignment of transcripts) uses global and local indices for fast, sensitive alignment with small memory requirements.",
"genre": "article",
"id": "sg:pub.10.1038/nmeth.3317",
"inLanguage": "en",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.2529425",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.2529453",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1033763",
"issn": [
"1548-7091",
"1548-7105"
],
"name": "Nature Methods",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "4",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "12"
}
],
"keywords": [
"memory requirements",
"small memory requirements",
"low memory requirements",
"sensitive alignment",
"local index",
"requirements",
"aligners",
"alignment",
"HISAT",
"index"
],
"name": "HISAT: a fast spliced aligner with low memory requirements",
"pagination": "357-360",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1005140994"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nmeth.3317"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"25751142"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nmeth.3317",
"https://app.dimensions.ai/details/publication/pub.1005140994"
],
"sdDataset": "articles",
"sdDatePublished": "2022-06-01T22:14",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220601/entities/gbq_results/article/article_652.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/nmeth.3317"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth.3317'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth.3317'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth.3317'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth.3317'
This table displays all metadata directly associated to this object as RDF triples.
153 TRIPLES
22 PREDICATES
51 URIs
34 LITERALS
13 BLANK NODES