Ontology type: schema:ScholarlyArticle
2014-07
AUTHORSKunio Hirata, Kyoko Shinzawa-Itoh, Naomine Yano, Shuhei Takemura, Koji Kato, Miki Hatanaka, Kazumasa Muramoto, Takako Kawahara, Tomitake Tsukihara, Eiki Yamashita, Kensuke Tono, Go Ueno, Takaaki Hikima, Hironori Murakami, Yuichi Inubushi, Makina Yabashi, Tetsuya Ishikawa, Masaki Yamamoto, Takashi Ogura, Hiroshi Sugimoto, Jian-Ren Shen, Shinya Yoshikawa, Hideo Ago
ABSTRACTWe report a method of femtosecond crystallography for solving radiation damage-free crystal structures of large proteins at sub-angstrom spatial resolution, using a large single crystal and the femtosecond pulses of an X-ray free-electron laser (XFEL). We demonstrated the performance of the method by determining a 1.9-Å radiation damage-free structure of bovine cytochrome c oxidase, a large (420-kDa), highly radiation-sensitive membrane protein. More... »
PAGES734-736
http://scigraph.springernature.com/pub.10.1038/nmeth.2962
DOIhttp://dx.doi.org/10.1038/nmeth.2962
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1027112154
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/24813624
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0299",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Other Physical Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/02",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Physical Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cattle",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Crystallography",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Electron Transport Complex IV",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Lasers",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Japan Science and Technology Agency",
"id": "https://www.grid.ac/institutes/grid.419082.6",
"name": [
"RIKEN SPring-8 Center, Sayo, Japan.",
"Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan."
],
"type": "Organization"
},
"familyName": "Hirata",
"givenName": "Kunio",
"id": "sg:person.01256470305.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01256470305.03"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Shinzawa-Itoh",
"givenName": "Kyoko",
"id": "sg:person.0617170653.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617170653.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Japan Science and Technology Agency",
"id": "https://www.grid.ac/institutes/grid.419082.6",
"name": [
"Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan.",
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Yano",
"givenName": "Naomine",
"id": "sg:person.01254056262.49",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01254056262.49"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Takemura",
"givenName": "Shuhei",
"id": "sg:person.01241174356.50",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01241174356.50"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Kato",
"givenName": "Koji",
"id": "sg:person.01306361532.30",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01306361532.30"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Hatanaka",
"givenName": "Miki",
"id": "sg:person.01355422756.47",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01355422756.47"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Muramoto",
"givenName": "Kazumasa",
"id": "sg:person.01322171462.70",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01322171462.70"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Kawahara",
"givenName": "Takako",
"id": "sg:person.0700132056.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0700132056.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Osaka University",
"id": "https://www.grid.ac/institutes/grid.136593.b",
"name": [
"Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan.",
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.",
"Institute for Protein Research, Osaka University, Suita, Japan."
],
"type": "Organization"
},
"familyName": "Tsukihara",
"givenName": "Tomitake",
"id": "sg:person.01235336457.47",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01235336457.47"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Osaka University",
"id": "https://www.grid.ac/institutes/grid.136593.b",
"name": [
"Institute for Protein Research, Osaka University, Suita, Japan."
],
"type": "Organization"
},
"familyName": "Yamashita",
"givenName": "Eiki",
"id": "sg:person.0713441134.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0713441134.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Japan Synchrotron Radiation Research Institute",
"id": "https://www.grid.ac/institutes/grid.410592.b",
"name": [
"Japan Synchrotron Radiation Research Institute, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Tono",
"givenName": "Kensuke",
"id": "sg:person.01130611300.43",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01130611300.43"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Ueno",
"givenName": "Go",
"id": "sg:person.01217542506.42",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01217542506.42"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Hikima",
"givenName": "Takaaki",
"id": "sg:person.01163735125.09",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01163735125.09"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Murakami",
"givenName": "Hironori",
"id": "sg:person.010227676146.10",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010227676146.10"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Inubushi",
"givenName": "Yuichi",
"id": "sg:person.01123075052.16",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123075052.16"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Yabashi",
"givenName": "Makina",
"id": "sg:person.0653422474.51",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653422474.51"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Ishikawa",
"givenName": "Tetsuya",
"id": "sg:person.014200751245.25",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014200751245.25"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Yamamoto",
"givenName": "Masaki",
"id": "sg:person.012771421304.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012771421304.81"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Ogura",
"givenName": "Takashi",
"id": "sg:person.0670155435.95",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0670155435.95"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Sugimoto",
"givenName": "Hiroshi",
"id": "sg:person.01217761023.07",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01217761023.07"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Okayama University",
"id": "https://www.grid.ac/institutes/grid.261356.5",
"name": [
"Photosynthesis Research Center, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan."
],
"type": "Organization"
},
"familyName": "Shen",
"givenName": "Jian-Ren",
"id": "sg:person.0576212465.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0576212465.23"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan."
],
"type": "Organization"
},
"familyName": "Yoshikawa",
"givenName": "Shinya",
"id": "sg:person.01162443606.46",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01162443606.46"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"RIKEN SPring-8 Center, Sayo, Japan."
],
"type": "Organization"
},
"familyName": "Ago",
"givenName": "Hideo",
"id": "sg:person.0662436426.00",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0662436426.00"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nature09913",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001726904",
"https://doi.org/10.1038/nature09913"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.str.2007.10.013",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001921837"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0076-6879(97)76066-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004907170"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0021889812002312",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005571973"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35021099",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005779397",
"https://doi.org/10.1038/35021099"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev-biophys-042910-155341",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006072763"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1006/jmbi.1994.0139",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008433412"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444905036693",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013232159"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444909052925",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020777046"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444909052925",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020777046"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444994003112",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025573949"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444910007262",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028218177"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444910007262",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028218177"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nphoton.2012.141",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028779905",
"https://doi.org/10.1038/nphoton.2012.141"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444912048524",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031049531"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/sj.emboj.7601618",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031985859"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444909047337",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032162623"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444909047337",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032162623"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444911001314",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032555428"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0505207102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033124430"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0021889813005888",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033958214"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0806391106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034383571"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0076-6879(85)15009-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036128123"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444913000061",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036142611"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s090744491003982x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040016867"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10863-010-9282-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047814094",
"https://doi.org/10.1007/s10863-010-9282-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10863-010-9282-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047814094",
"https://doi.org/10.1007/s10863-010-9282-y"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0365110x62000067",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049883839"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.274.47.33403",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050076746"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/jz3006223",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1056134511"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1195591",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062462774"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1234273",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062467984"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.235.4787.458",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062533650"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.7652554",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062648287"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1079343524",
"type": "CreativeWork"
}
],
"datePublished": "2014-07",
"datePublishedReg": "2014-07-01",
"description": "We report a method of femtosecond crystallography for solving radiation damage-free crystal structures of large proteins at sub-angstrom spatial resolution, using a large single crystal and the femtosecond pulses of an X-ray free-electron laser (XFEL). We demonstrated the performance of the method by determining a 1.9-\u00c5 radiation damage-free structure of bovine cytochrome c oxidase, a large (420-kDa), highly radiation-sensitive membrane protein.",
"genre": "research_article",
"id": "sg:pub.10.1038/nmeth.2962",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.6107465",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6033062",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6084477",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6144024",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6084617",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6132893",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1033763",
"issn": [
"1548-7091",
"1548-7105"
],
"name": "Nature Methods",
"type": "Periodical"
},
{
"issueNumber": "7",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "11"
}
],
"name": "Determination of damage-free crystal structure of an X-ray\u2013sensitive protein using an XFEL",
"pagination": "734-736",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"8127706ba882d583445806ba784ffbae54d9ef48d1e53a54aa70b8fa91601ea7"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"24813624"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101215604"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nmeth.2962"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1027112154"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nmeth.2962",
"https://app.dimensions.ai/details/publication/pub.1027112154"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T01:46",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8700_00000424.jsonl",
"type": "ScholarlyArticle",
"url": "http://www.nature.com/articles/nmeth.2962"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2962'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2962'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2962'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2962'
This table displays all metadata directly associated to this object as RDF triples.
398 TRIPLES
21 PREDICATES
65 URIs
26 LITERALS
14 BLANK NODES