Ontology type: schema:ScholarlyArticle
2013-05-05
AUTHORSChen-Shan Chin, David H Alexander, Patrick Marks, Aaron A Klammer, James Drake, Cheryl Heiner, Alicia Clum, Alex Copeland, John Huddleston, Evan E Eichler, Stephen W Turner, Jonas Korlach
ABSTRACTUnlike hybrid approaches that use multiple libraries for de novo assembly, the hierarchical genome-assembly process uses data from only a single long-read SMRT sequencing library to produce high-quality finished microbial genome or BAC assemblies in an automated workflow.
PAGES563-569
http://scigraph.springernature.com/pub.10.1038/nmeth.2474
DOIhttp://dx.doi.org/10.1038/nmeth.2474
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1002897135
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/23644548
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chromosomes, Artificial, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Escherichia coli",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Library",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Repetitive Sequences, Nucleic Acid",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, DNA",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Chin",
"givenName": "Chen-Shan",
"id": "sg:person.0703722317.20",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0703722317.20"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Alexander",
"givenName": "David H",
"id": "sg:person.01005042630.59",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01005042630.59"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Marks",
"givenName": "Patrick",
"id": "sg:person.01076055604.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01076055604.81"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Klammer",
"givenName": "Aaron A",
"id": "sg:person.01334030045.84",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01334030045.84"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Drake",
"givenName": "James",
"id": "sg:person.01144517575.41",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01144517575.41"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Heiner",
"givenName": "Cheryl",
"id": "sg:person.01300020467.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300020467.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Joint Genome Institute, Walnut Creek, California, USA",
"id": "http://www.grid.ac/institutes/grid.451309.a",
"name": [
"Joint Genome Institute, Walnut Creek, California, USA"
],
"type": "Organization"
},
"familyName": "Clum",
"givenName": "Alicia",
"id": "sg:person.0636376346.97",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0636376346.97"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Joint Genome Institute, Walnut Creek, California, USA",
"id": "http://www.grid.ac/institutes/grid.451309.a",
"name": [
"Joint Genome Institute, Walnut Creek, California, USA"
],
"type": "Organization"
},
"familyName": "Copeland",
"givenName": "Alex",
"id": "sg:person.0630621252.13",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630621252.13"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genome Sciences, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Genome Sciences, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "Huddleston",
"givenName": "John",
"id": "sg:person.0650352515.70",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0650352515.70"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genome Sciences, University of Washington, Seattle, Washington, USA",
"id": "http://www.grid.ac/institutes/grid.34477.33",
"name": [
"Department of Genome Sciences, University of Washington, Seattle, Washington, USA"
],
"type": "Organization"
},
"familyName": "Eichler",
"givenName": "Evan E",
"id": "sg:person.0705101106.89",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0705101106.89"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Turner",
"givenName": "Stephen W",
"id": "sg:person.013172763022.80",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013172763022.80"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Pacific Biosciences, Menlo Park, California, USA",
"id": "http://www.grid.ac/institutes/grid.423340.2",
"name": [
"Pacific Biosciences, Menlo Park, California, USA"
],
"type": "Organization"
},
"familyName": "Korlach",
"givenName": "Jonas",
"id": "sg:person.0610430600.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0610430600.26"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nbt.2288",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024779544",
"https://doi.org/10.1038/nbt.2288"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.4056/sigs.22138",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016006602",
"https://doi.org/10.4056/sigs.22138"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-61779-361-5_4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034232366",
"https://doi.org/10.1007/978-1-61779-361-5_4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.4056/sigs.1032748",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005867221",
"https://doi.org/10.4056/sigs.1032748"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro2850",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010614211",
"https://doi.org/10.1038/nrmicro2850"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro2283",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030749434",
"https://doi.org/10.1038/nrmicro2283"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-13-238",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028668057",
"https://doi.org/10.1186/1471-2105-13-238"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-11-21",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040509079",
"https://doi.org/10.1186/1471-2105-11-21"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2004-5-2-r12",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022585853",
"https://doi.org/10.1186/gb-2004-5-2-r12"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro1901",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040075783",
"https://doi.org/10.1038/nrmicro1901"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-8-64",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034119206",
"https://doi.org/10.1186/1471-2105-8-64"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.2280",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033360952",
"https://doi.org/10.1038/nbt.2280"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2010-11-11-r116",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042567408",
"https://doi.org/10.1186/gb-2010-11-11-r116"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-13-375",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019584439",
"https://doi.org/10.1186/1471-2164-13-375"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2958",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004346662",
"https://doi.org/10.1038/nrg2958"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2011-12-10-230",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023607198",
"https://doi.org/10.1186/gb-2011-12-10-230"
],
"type": "CreativeWork"
}
],
"datePublished": "2013-05-05",
"datePublishedReg": "2013-05-05",
"description": "Unlike hybrid approaches that use multiple libraries for de novo assembly, the hierarchical genome-assembly process uses data from only a single long-read SMRT sequencing library to produce high-quality finished microbial genome or BAC assemblies in an automated workflow.",
"genre": "article",
"id": "sg:pub.10.1038/nmeth.2474",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1033763",
"issn": [
"1548-7091",
"1548-7105"
],
"name": "Nature Methods",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "6",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "10"
}
],
"keywords": [
"Hierarchical Genome Assembly Process",
"de novo assembly",
"microbial genome assemblies",
"genome assembly process",
"SMRT sequencing data",
"microbial genomes",
"BAC assemblies",
"genome assembly",
"novo assembly",
"sequencing data",
"assembly",
"genome",
"SMRT",
"nonhybrid",
"library",
"multiple libraries",
"data",
"process",
"workflow",
"approach",
"hybrid approach"
],
"name": "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data",
"pagination": "563-569",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1002897135"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nmeth.2474"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"23644548"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nmeth.2474",
"https://app.dimensions.ai/details/publication/pub.1002897135"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-10T10:06",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220509/entities/gbq_results/article/article_588.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/nmeth.2474"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2474'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2474'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2474'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2474'
This table displays all metadata directly associated to this object as RDF triples.
258 TRIPLES
22 PREDICATES
70 URIs
46 LITERALS
14 BLANK NODES