PRIDE Cluster: building a consensus of proteomics data View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nmeth.2343

DOI

http://dx.doi.org/10.1038/nmeth.2343

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1046968261

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/23361086


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/10", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Technology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical and Health Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Algorithms", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cluster Analysis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Consensus", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Database Management Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Databases, Protein", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Mass Spectrometry", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Proteomics", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Griss", 
        "givenName": "Johannes", 
        "id": "sg:person.0663303205.67", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663303205.67"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Foster", 
        "givenName": "Joseph M", 
        "id": "sg:person.01272460705.79", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272460705.79"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hermjakob", 
        "givenName": "Henning", 
        "id": "sg:person.01070655672.90", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070655672.90"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "European Molecular Biology Laboratory\u2013European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Vizca\u00edno", 
        "givenName": "Juan Antonio", 
        "id": "sg:person.01001011433.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001011433.30"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/s13361-011-0139-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004312525", 
          "https://doi.org/10.1007/s13361-011-0139-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth1019", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009487848", 
          "https://doi.org/10.1038/nmeth1019"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.1609", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007146171", 
          "https://doi.org/10.1038/nmeth.1609"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2013-01-30", 
    "datePublishedReg": "2013-01-30", 
    "genre": "article", 
    "id": "sg:pub.10.1038/nmeth.2343", 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.3772917", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.3638105", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.3784916", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1033763", 
        "issn": [
          "1548-7091", 
          "1548-7105"
        ], 
        "name": "Nature Methods", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "10"
      }
    ], 
    "keywords": [
      "consensus", 
      "proteomic data", 
      "data"
    ], 
    "name": "PRIDE Cluster: building a consensus of proteomics data", 
    "pagination": "95-96", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1046968261"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/nmeth.2343"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "23361086"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/nmeth.2343", 
      "https://app.dimensions.ai/details/publication/pub.1046968261"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-10-01T06:38", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20221001/entities/gbq_results/article/article_590.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/nmeth.2343"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2343'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2343'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2343'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nmeth.2343'


 

This table displays all metadata directly associated to this object as RDF triples.

134 TRIPLES      20 PREDICATES      38 URIs      26 LITERALS      14 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/nmeth.2343 schema:about N53f64767b3d34a0fa8a8aff54d8775e2
2 N5e14904457104575b73f544be0756332
3 N6c21a83a460f41e39f466baac482e2a5
4 N8bca9d8527ef4c2e974fee621a700a63
5 N99cdf49438fa4f3ebced55ae579364ff
6 Nce3f0f68ec92446a98eb1fee85af6702
7 Nfd348194ac834b43bccae357adaea8a2
8 anzsrc-for:06
9 anzsrc-for:10
10 anzsrc-for:11
11 schema:author Nc0590b719dc6401d944f9ae64ddd9933
12 schema:citation sg:pub.10.1007/s13361-011-0139-3
13 sg:pub.10.1038/nmeth.1609
14 sg:pub.10.1038/nmeth1019
15 schema:datePublished 2013-01-30
16 schema:datePublishedReg 2013-01-30
17 schema:genre article
18 schema:isAccessibleForFree true
19 schema:isPartOf N370f6467b72e4426b214a9574b5d4b74
20 Nb6fe6fdb63d947c8a13600b880752723
21 sg:journal.1033763
22 schema:keywords consensus
23 data
24 proteomic data
25 schema:name PRIDE Cluster: building a consensus of proteomics data
26 schema:pagination 95-96
27 schema:productId N7ace024b6d9b4ef898f6e12ba58586ec
28 N9eb96aa6700e4772a517df0ee4cbaa91
29 Nf4130aae762a47dca70009bf3963ef94
30 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046968261
31 https://doi.org/10.1038/nmeth.2343
32 schema:sdDatePublished 2022-10-01T06:38
33 schema:sdLicense https://scigraph.springernature.com/explorer/license/
34 schema:sdPublisher Ncc421c75820643ae9a56a96049395d27
35 schema:url https://doi.org/10.1038/nmeth.2343
36 sgo:license sg:explorer/license/
37 sgo:sdDataset articles
38 rdf:type schema:ScholarlyArticle
39 N370f6467b72e4426b214a9574b5d4b74 schema:issueNumber 2
40 rdf:type schema:PublicationIssue
41 N53f64767b3d34a0fa8a8aff54d8775e2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
42 schema:name Algorithms
43 rdf:type schema:DefinedTerm
44 N5e14904457104575b73f544be0756332 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
45 schema:name Database Management Systems
46 rdf:type schema:DefinedTerm
47 N6c21a83a460f41e39f466baac482e2a5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
48 schema:name Proteomics
49 rdf:type schema:DefinedTerm
50 N72d2004617314671a4c03136b1c2700e rdf:first sg:person.01001011433.30
51 rdf:rest rdf:nil
52 N7ace024b6d9b4ef898f6e12ba58586ec schema:name doi
53 schema:value 10.1038/nmeth.2343
54 rdf:type schema:PropertyValue
55 N8bca9d8527ef4c2e974fee621a700a63 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
56 schema:name Consensus
57 rdf:type schema:DefinedTerm
58 N99cdf49438fa4f3ebced55ae579364ff schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
59 schema:name Databases, Protein
60 rdf:type schema:DefinedTerm
61 N9eb96aa6700e4772a517df0ee4cbaa91 schema:name pubmed_id
62 schema:value 23361086
63 rdf:type schema:PropertyValue
64 Nb6fe6fdb63d947c8a13600b880752723 schema:volumeNumber 10
65 rdf:type schema:PublicationVolume
66 Nbac650e6bd374317a7b11350b3f96043 rdf:first sg:person.01272460705.79
67 rdf:rest Nf54da8a1eb4241128741a57fe616379e
68 Nc0590b719dc6401d944f9ae64ddd9933 rdf:first sg:person.0663303205.67
69 rdf:rest Nbac650e6bd374317a7b11350b3f96043
70 Ncc421c75820643ae9a56a96049395d27 schema:name Springer Nature - SN SciGraph project
71 rdf:type schema:Organization
72 Nce3f0f68ec92446a98eb1fee85af6702 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
73 schema:name Cluster Analysis
74 rdf:type schema:DefinedTerm
75 Nf4130aae762a47dca70009bf3963ef94 schema:name dimensions_id
76 schema:value pub.1046968261
77 rdf:type schema:PropertyValue
78 Nf54da8a1eb4241128741a57fe616379e rdf:first sg:person.01070655672.90
79 rdf:rest N72d2004617314671a4c03136b1c2700e
80 Nfd348194ac834b43bccae357adaea8a2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
81 schema:name Mass Spectrometry
82 rdf:type schema:DefinedTerm
83 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
84 schema:name Biological Sciences
85 rdf:type schema:DefinedTerm
86 anzsrc-for:10 schema:inDefinedTermSet anzsrc-for:
87 schema:name Technology
88 rdf:type schema:DefinedTerm
89 anzsrc-for:11 schema:inDefinedTermSet anzsrc-for:
90 schema:name Medical and Health Sciences
91 rdf:type schema:DefinedTerm
92 sg:grant.3638105 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth.2343
93 rdf:type schema:MonetaryGrant
94 sg:grant.3772917 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth.2343
95 rdf:type schema:MonetaryGrant
96 sg:grant.3784916 http://pending.schema.org/fundedItem sg:pub.10.1038/nmeth.2343
97 rdf:type schema:MonetaryGrant
98 sg:journal.1033763 schema:issn 1548-7091
99 1548-7105
100 schema:name Nature Methods
101 schema:publisher Springer Nature
102 rdf:type schema:Periodical
103 sg:person.01001011433.30 schema:affiliation grid-institutes:None
104 schema:familyName Vizcaíno
105 schema:givenName Juan Antonio
106 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001011433.30
107 rdf:type schema:Person
108 sg:person.01070655672.90 schema:affiliation grid-institutes:None
109 schema:familyName Hermjakob
110 schema:givenName Henning
111 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070655672.90
112 rdf:type schema:Person
113 sg:person.01272460705.79 schema:affiliation grid-institutes:None
114 schema:familyName Foster
115 schema:givenName Joseph M
116 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272460705.79
117 rdf:type schema:Person
118 sg:person.0663303205.67 schema:affiliation grid-institutes:None
119 schema:familyName Griss
120 schema:givenName Johannes
121 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663303205.67
122 rdf:type schema:Person
123 sg:pub.10.1007/s13361-011-0139-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004312525
124 https://doi.org/10.1007/s13361-011-0139-3
125 rdf:type schema:CreativeWork
126 sg:pub.10.1038/nmeth.1609 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007146171
127 https://doi.org/10.1038/nmeth.1609
128 rdf:type schema:CreativeWork
129 sg:pub.10.1038/nmeth1019 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009487848
130 https://doi.org/10.1038/nmeth1019
131 rdf:type schema:CreativeWork
132 grid-institutes:None schema:alternateName European Molecular Biology Laboratory–European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK
133 schema:name European Molecular Biology Laboratory–European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK
134 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...