Metagenomic microbial community profiling using unique clade-specific marker genes View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2012-06-10

AUTHORS

Nicola Segata, Levi Waldron, Annalisa Ballarini, Vagheesh Narasimhan, Olivier Jousson, Curtis Huttenhower

ABSTRACT

MetaPhlAn (metagenomic phylogenetic analysis) allows the rapid and accurate identification of microbial species and higher clades from shotgun sequencing data.

PAGES

811-814

References to SciGraph publications

  • 2012-06-13. A framework for human microbiome research in NATURE
  • 2011-08-09. Classifying short genomic fragments from novel lineages using composition and homology in BMC BIOINFORMATICS
  • 2006-12-10. Accurate phylogenetic classification of variable-length DNA fragments in NATURE METHODS
  • 2010-08-13. Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods in BMC ECOLOGY AND EVOLUTION
  • 2009-08-02. Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models in NATURE METHODS
  • 2007-04-29. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods in NATURE METHODS
  • 2008-10-13. A simple, fast, and accurate method of phylogenomic inference in GENOME BIOLOGY
  • 2010-03. A human gut microbial gene catalogue established by metagenomic sequencing in NATURE
  • 2008-11-30. A core gut microbiome in obese and lean twins in NATURE
  • 2011-02-25. Taxonomic metagenome sequence assignment with structured output models in NATURE METHODS
  • 2005-05-10. Microbial community genomics in the ocean in NATURE REVIEWS MICROBIOLOGY
  • 2005-06. The metagenomics of soil in NATURE REVIEWS MICROBIOLOGY
  • 2011-04-28. PhymmBL expanded: confidence scores, custom databases, parallelization and more in NATURE METHODS
  • 2011-04-20. Enterotypes of the human gut microbiome in NATURE
  • 2011-01-31. RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles in BMC BIOINFORMATICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nmeth.2066

    DOI

    http://dx.doi.org/10.1038/nmeth.2066

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22688413


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