Fiji: an open-source platform for biological-image analysis View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2012-06-28

AUTHORS

Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid, Jean-Yves Tinevez, Daniel James White, Volker Hartenstein, Kevin Eliceiri, Pavel Tomancak, Albert Cardona

ABSTRACT

Presented is an overview of the image-analysis software platform Fiji, a distribution of ImageJ that updates the underlying ImageJ architecture and adds modern software design elements to expand the capabilities of the platform and facilitate collaboration between biologists and computer scientists.

PAGES

676-682

References to SciGraph publications

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  • 2010-05-21. A high-level 3D visualization API for Java and ImageJ in BMC BIOINFORMATICS
  • 2006-10-31. CellProfiler: image analysis software for identifying and quantifying cell phenotypes in GENOME BIOLOGY
  • 2008-06-29. Automated analysis of embryonic gene expression with cellular resolution in C. elegans in NATURE METHODS
  • 2012-06-10. Elastic volume reconstruction from series of ultra-thin microscopy sections in NATURE METHODS
  • 2010-02-28. Systems survey of endocytosis by multiparametric image analysis in NATURE
  • 1988-01. Snakes: Active contour models in INTERNATIONAL JOURNAL OF COMPUTER VISION
  • 2010-03-14. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets in NATURE BIOTECHNOLOGY
  • 2011-03-09. Network anatomy and in vivo physiology of visual cortical neurons in NATURE
  • 2010-06-13. Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution in NATURE METHODS
  • 2010. Geometrical Consistent 3D Tracing of Neuronal Processes in ssTEM Data in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION – MICCAI 2010
  • 2011-05-01. BrainAligner: 3D registration atlases of Drosophila brains in NATURE METHODS
  • 2006. Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization in COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS
  • 1990-01. The chemical basis of morphogenesis in BULLETIN OF MATHEMATICAL BIOLOGY
  • 2008. KNIME: The Konstanz Information Miner in DATA ANALYSIS, MACHINE LEARNING AND APPLICATIONS
  • 2010-06. Software for bead-based registration of selective plane illumination microscopy data in NATURE METHODS
  • 2010-04. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes in NATURE
  • 2009-08-16. A 3D digital atlas of C. elegans and its application to single-cell analyses in NATURE METHODS
  • Journal

    TITLE

    Nature Methods

    ISSUE

    7

    VOLUME

    9

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nmeth.2019

    DOI

    http://dx.doi.org/10.1038/nmeth.2019

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1026706357

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22743772


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