Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2009-08-02

AUTHORS

Arthur Brady, Steven L Salzberg

ABSTRACT

This algorithm for the assignment of phylogenetic groups to fragments generated by metagenomic sequencing projects improves on the currently required 1 kb fragment length for classification. Trained on 539 complete genomes, Phymm can classify reads as short as 100 bp. Combining Phymm with the sequence alignment algorithm BLAST further improves accuracy. More... »

PAGES

673-676

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nmeth.1358

DOI

http://dx.doi.org/10.1038/nmeth.1358

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1008886215

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/19648916


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