Nucleosome positions predicted through comparative genomics View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2006-10

AUTHORS

Ilya P Ioshikhes, Istvan Albert, Sara J Zanton, B Franklin Pugh

ABSTRACT

DNA sequence has long been recognized as an important contributor to nucleosome positioning, which has the potential to regulate access to genes. The extent to which the nucleosomal architecture at promoters is delineated by the underlying sequence is now being worked out. Here we use comparative genomics to report a genome-wide map of nucleosome positioning sequences (NPSs) located in the vicinity of all Saccharomyces cerevisiae genes. We find that the underlying DNA sequence provides a very good predictor of nucleosome locations that have been experimentally mapped to a small fraction of the genome. Notably, distinct classes of genes possess characteristic arrangements of NPSs that may be important for their regulation. In particular, genes that have a relatively compact NPS arrangement over the promoter region tend to have a TATA box buried in an NPS and tend to be highly regulated by chromatin modifying and remodeling factors. More... »

PAGES

1210-1215

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ng1878

DOI

http://dx.doi.org/10.1038/ng1878

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1028635667

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/16964265


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