Biased biological functions of horizontally transferred genes in prokaryotic genomes View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2004-07

AUTHORS

Yoji Nakamura, Takeshi Itoh, Hideo Matsuda, Takashi Gojobori

ABSTRACT

Horizontal gene transfer is one of the main mechanisms contributing to microbial genome diversification. To clarify the overall picture of interspecific gene flow among prokaryotes, we developed a new method for detecting horizontally transferred genes and their possible donors by Bayesian inference with training models for nucleotide composition. Our method gives the average posterior probability (horizontal transfer index) for each gene sequence, with a low horizontal transfer index indicating recent horizontal transfer. We found that 14% of open reading frames in 116 prokaryotic complete genomes were subjected to recent horizontal transfer. Based on this data set, we quantitatively determined that the biological functions of horizontally transferred genes, except mobile element genes, are biased to three categories: cell surface, DNA binding and pathogenicity-related functions. Thus, the transferability of genes seems to depend heavily on their functions. More... »

PAGES

760-766

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ng1381

DOI

http://dx.doi.org/10.1038/ng1381

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1002203695

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/15208628


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