Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2010-12

AUTHORS

Hon-Ming Lam, Xun Xu, Xin Liu, Wenbin Chen, Guohua Yang, Fuk-Ling Wong, Man-Wah Li, Weiming He, Nan Qin, Bo Wang, Jun Li, Min Jian, Jian Wang, Guihua Shao, Jun Wang, Samuel Sai-Ming Sun, Gengyun Zhang

ABSTRACT

We report a large-scale analysis of the patterns of genome-wide genetic variation in soybeans. We re-sequenced a total of 17 wild and 14 cultivated soybean genomes to an average of approximately ×5 depth and >90% coverage using the Illumina Genome Analyzer II platform. We compared the patterns of genetic variation between wild and cultivated soybeans and identified higher allelic diversity in wild soybeans. We identified a high level of linkage disequilibrium in the soybean genome, suggesting that marker-assisted breeding of soybean will be less challenging than map-based cloning. We report linkage disequilibrium block location and distribution, and we identified a set of 205,614 tag SNPs that may be useful for QTL mapping and association studies. The data here provide a valuable resource for the analysis of wild soybeans and to facilitate future breeding and quantitative trait analysis. More... »

PAGES

1053

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ng.715

DOI

http://dx.doi.org/10.1038/ng.715

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1001765888

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21076406


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