Ontology type: schema:ScholarlyArticle
2016-10-03
AUTHORSWilliams Turpin, Osvaldo Espin-Garcia, Wei Xu, Mark S Silverberg, David Kevans, Michelle I Smith, David S Guttman, Anne Griffiths, Remo Panaccione, Anthony Otley, Lizhen Xu, Konstantin Shestopaloff, Gabriel Moreno-Hagelsieb, Andrew D Paterson, Kenneth Croitoru
ABSTRACTKenneth Croitoru, Andrew Paterson and colleagues perform genome-wide association analysis for gut microbiome composition. They identify 58 SNPs significantly associated with relative abundance of 33 taxa and replicate 4 of the associations in an independent cohort, providing further evidence that host genetics can influence the gut microbiota.
PAGES1413-1417
http://scigraph.springernature.com/pub.10.1038/ng.3693
DOIhttp://dx.doi.org/10.1038/ng.3693
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1002138629
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/27694960
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Microbiology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Adolescent",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Bacteria",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cohort Studies",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Female",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gastrointestinal Microbiome",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Human",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genotype",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Male",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polymorphism, Single Nucleotide",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Young Adult",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada",
"Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Turpin",
"givenName": "Williams",
"id": "sg:person.01041452022.76",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041452022.76"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada",
"Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Espin-Garcia",
"givenName": "Osvaldo",
"id": "sg:person.0711267150.72",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0711267150.72"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Xu",
"givenName": "Wei",
"id": "sg:person.0606503537.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606503537.26"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.250674.2",
"name": [
"Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada",
"Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada",
"Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Silverberg",
"givenName": "Mark S",
"id": "sg:person.01262212013.68",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262212013.68"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada",
"Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Kevans",
"givenName": "David",
"id": "sg:person.01260560150.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260560150.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.250674.2",
"name": [
"Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada",
"Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Smith",
"givenName": "Michelle I",
"id": "sg:person.011602404733.31",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011602404733.31"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, Canada",
"Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Guttman",
"givenName": "David S",
"id": "sg:person.01216111204.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01216111204.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Gastroenterology, Department of Pediatrics, Hepatology and Nutrition, The Hospital for Sick Children, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.42327.30",
"name": [
"Division of Gastroenterology, Department of Pediatrics, Hepatology and Nutrition, The Hospital for Sick Children, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Griffiths",
"givenName": "Anne",
"id": "sg:person.0645105742.79",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0645105742.79"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Gastroenterology and Hepatology, Inflammatory Bowel Disease Clinic, University of Calgary, Calgary, Alberta, Canada",
"id": "http://www.grid.ac/institutes/grid.22072.35",
"name": [
"Division of Gastroenterology and Hepatology, Inflammatory Bowel Disease Clinic, University of Calgary, Calgary, Alberta, Canada"
],
"type": "Organization"
},
"familyName": "Panaccione",
"givenName": "Remo",
"id": "sg:person.01363347323.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01363347323.34"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Departement of Pediatrics, IWK Health Centre, Halifax, Nova Scotia, Canada",
"id": "http://www.grid.ac/institutes/grid.414870.e",
"name": [
"Departement of Pediatrics, IWK Health Centre, Halifax, Nova Scotia, Canada"
],
"type": "Organization"
},
"familyName": "Otley",
"givenName": "Anthony",
"id": "sg:person.01303731024.64",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01303731024.64"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Genetics and Genome Biology, The Hospital for Sick Children Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.42327.30",
"name": [
"Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"Genetics and Genome Biology, The Hospital for Sick Children Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Xu",
"givenName": "Lizhen",
"id": "sg:person.01236655170.74",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01236655170.74"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Shestopaloff",
"givenName": "Konstantin",
"id": "sg:person.01102172002.33",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01102172002.33"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.268252.9",
"name": [
"Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Moreno-Hagelsieb",
"givenName": "Gabriel",
"id": "sg:person.01233635426.12",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01233635426.12"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Division of Epidemiology, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.17063.33",
"name": [
"Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada",
"Genetics and Genome Biology, The Hospital for Sick Children Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada",
"Division of Epidemiology, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Paterson",
"givenName": "Andrew D",
"id": "sg:person.012152650702.21",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012152650702.21"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada",
"id": "http://www.grid.ac/institutes/grid.250674.2",
"name": [
"Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada",
"Division of Gastroenterology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada",
"Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada"
],
"type": "Organization"
},
"familyName": "Croitoru",
"givenName": "Kenneth",
"id": "sg:person.01355473557.38",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01355473557.38"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nrgastro.2012.152",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023086053",
"https://doi.org/10.1038/nrgastro.2012.152"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-13-31",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047017534",
"https://doi.org/10.1186/1471-2105-13-31"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nri3111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015695778",
"https://doi.org/10.1038/nri3111"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature07540",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030170002",
"https://doi.org/10.1038/nature07540"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.hdy.6800717",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034994515",
"https://doi.org/10.1038/sj.hdy.6800717"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.4056/sigs.1002553",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052394918",
"https://doi.org/10.4056/sigs.1002553"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng.2435",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016174016",
"https://doi.org/10.1038/ng.2435"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.2676",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034019934",
"https://doi.org/10.1038/nbt.2676"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11450",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004546178",
"https://doi.org/10.1038/nature11450"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11209",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027248000",
"https://doi.org/10.1038/nature11209"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro3259",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040671720",
"https://doi.org/10.1038/nrmicro3259"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11582",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046541188",
"https://doi.org/10.1038/nature11582"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ismej.2012.8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038992953",
"https://doi.org/10.1038/ismej.2012.8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature12198",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002791386",
"https://doi.org/10.1038/nature12198"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng.2653",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032444369",
"https://doi.org/10.1038/ng.2653"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/447655a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027012183",
"https://doi.org/10.1038/447655a"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature11711",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004024856",
"https://doi.org/10.1038/nature11711"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.f.303",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009032055",
"https://doi.org/10.1038/nmeth.f.303"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro2540",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045931365",
"https://doi.org/10.1038/nrmicro2540"
],
"type": "CreativeWork"
}
],
"datePublished": "2016-10-03",
"datePublishedReg": "2016-10-03",
"description": "Kenneth Croitoru, Andrew Paterson and colleagues perform genome-wide association analysis for gut microbiome composition. They identify 58 SNPs significantly associated with relative abundance of 33 taxa and replicate 4 of the associations in an independent cohort, providing further evidence that host genetics can influence the gut microbiota.",
"genre": "article",
"id": "sg:pub.10.1038/ng.3693",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1103138",
"issn": [
"1061-4036",
"1546-1718"
],
"name": "Nature Genetics",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "11",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "48"
}
],
"keywords": [
"genome-wide association analysis",
"host genome",
"intestinal microbial composition",
"association analysis",
"microbial composition",
"relative abundance",
"host genetics",
"microbiome composition",
"gut microbiome composition",
"large healthy cohort",
"gut microbiota",
"healthy cohort",
"independent cohort",
"genome",
"taxa",
"genetics",
"SNPs",
"cohort",
"abundance",
"further evidence",
"microbiota",
"association",
"composition",
"evidence",
"analysis",
"colleagues",
"Paterson"
],
"name": "Association of host genome with intestinal microbial composition in a large healthy cohort",
"pagination": "1413-1417",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1002138629"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/ng.3693"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"27694960"
]
}
],
"sameAs": [
"https://doi.org/10.1038/ng.3693",
"https://app.dimensions.ai/details/publication/pub.1002138629"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T17:04",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_704.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/ng.3693"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/ng.3693'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/ng.3693'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/ng.3693'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/ng.3693'
This table displays all metadata directly associated to this object as RDF triples.
340 TRIPLES
21 PREDICATES
83 URIs
55 LITERALS
18 BLANK NODES