The Cancer Genome Atlas Pan-Cancer analysis project View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-09-26

AUTHORS

Kyle Chang, Chad J Creighton, Caleb Davis, Lawrence Donehower, Jennifer Drummond, David Wheeler, Adrian Ally, Miruna Balasundaram, Inanc Birol, Yaron S N Butterfield, Andy Chu, Eric Chuah, Hye-Jung E Chun, Noreen Dhalla, Ranabir Guin, Martin Hirst, Carrie Hirst, Robert A Holt, Steven J M Jones, Darlene Lee, Haiyan I Li, Marco A Marra, Michael Mayo, Richard A Moore, Andrew J Mungall, A Gordon Robertson, Jacqueline E Schein, Payal Sipahimalani, Angela Tam, Nina Thiessen, Richard J Varhol, Rameen Beroukhim, Ami S Bhatt, Angela N Brooks, Andrew D Cherniack, Samuel S Freeman, Stacey B Gabriel, Elena Helman, Joonil Jung, Matthew Meyerson, Akinyemi I Ojesina, Chandra Sekhar Pedamallu, Gordon Saksena, Steven E Schumacher, Barbara Tabak, Travis Zack, Eric S Lander, Christopher A Bristow, Angela Hadjipanayis, Psalm Haseley, Raju Kucherlapati, Semin Lee, Eunjung Lee, Lovelace J Luquette, Harshad S Mahadeshwar, Angeliki Pantazi, Michael Parfenov, Peter J Park, Alexei Protopopov, Xiaojia Ren, Netty Santoso, Jonathan Seidman, Sahil Seth, Xingzhi Song, Jiabin Tang, Ruibin Xi, Andrew W Xu, Lixing Yang, Dong Zeng, J Todd Auman, Saianand Balu, Elizabeth Buda, Cheng Fan, Katherine A Hoadley, Corbin D Jones, Shaowu Meng, Piotr A Mieczkowski, Joel S Parker, Charles M Perou, Jeffrey Roach, Yan Shi, Grace O Silva, Donghui Tan, Umadevi Veluvolu, Scot Waring, Matthew D Wilkerson, Junyuan Wu, Wei Zhao, Tom Bodenheimer, D Neil Hayes, Alan P Hoyle, Stuart R Jeffreys, Lisle E Mose, Janae V Simons, Mathew G Soloway, Stephen B Baylin, Benjamin P Berman, Moiz S Bootwalla, Ludmila Danilova, James G Herman, Toshinori Hinoue, Peter W Laird, Suhn K Rhie, Hui Shen, Timothy Triche, Daniel J Weisenberger, Scott L Carter, Kristian Cibulskis, Lynda Chin, Jianhua Zhang, Gad Getz, Carrie Sougnez, Min Wang, Gordon Saksena, Scott L Carter, Kristian Cibulskis, Lynda Chin, Jianhua Zhang, Gad Getz, Huyen Dinh, Harsha Vardhan Doddapaneni, Richard Gibbs, Preethi Gunaratne, Yi Han, Divya Kalra, Christie Kovar, Lora Lewis, Margaret Morgan, Donna Morton, Donna Muzny, Jeffrey Reid, Liu Xi, Juok Cho, Daniel DiCara, Scott Frazer, Nils Gehlenborg, David I Heiman, Jaegil Kim, Michael S Lawrence, Pei Lin, Yingchun Liu, Michael S Noble, Petar Stojanov, Doug Voet, Hailei Zhang, Lihua Zou, Chip Stewart, Brady Bernard, Ryan Bressler, Andrea Eakin, Lisa Iype, Theo Knijnenburg, Roger Kramer, Richard Kreisberg, Kalle Leinonen, Jake Lin, Yuexin Liu, Michael Miller, Sheila M Reynolds, Hector Rovira, Ilya Shmulevich, Vesteinn Thorsson, Da Yang, Wei Zhang, Samirkumar Amin, Chang-Jiun Wu, Chia-Chin Wu, Rehan Akbani, Kenneth Aldape, Keith A Baggerly, Bradley Broom, Tod D Casasent, James Cleland, Chad Creighton, Deepti Dodda, Mary Edgerton, Leng Han, Shelley M Herbrich, Zhenlin Ju, Hoon Kim, Seth Lerner, Jun Li, Han Liang, Wenbin Liu, Philip L Lorenzi, Yiling Lu, James Melott, Gordon B Mills, Lam Nguyen, Xiaoping Su, Roeland Verhaak, Wenyi Wang, John N Weinstein, Andrew Wong, Yang Yang, Jun Yao, Rong Yao, Kosuke Yoshihara, Yuan Yuan, Alfred K Yung, Nianxiang Zhang, Siyuan Zheng, Michael Ryan, David W Kane, B Arman Aksoy, Giovanni Ciriello, Gideon Dresdner, Jianjiong Gao, Benjamin Gross, Anders Jacobsen, Andre Kahles, Marc Ladanyi, William Lee, Kjong-Van Lehmann, Martin L Miller, Ricardo Ramirez, Gunnar Rätsch, Boris Reva, Chris Sander, Nikolaus Schultz, Yasin Senbabaoglu, Ronglai Shen, Rileen Sinha, S Onur Sumer, Yichao Sun, Barry S Taylor, Nils Weinhold, Suzanne Fei, Paul Spellman, Christopher Benz, Daniel Carlin, Melisssa Cline, Brian Craft, Kyle Ellrott, Mary Goldman, David Haussler, Singer Ma, Sam Ng, Evan Paull, Amie Radenbaugh, Sofie Salama, Artem Sokolov, Joshua M Stuart, Teresa Swatloski, Vladislav Uzunangelov, Peter Waltman, Christina Yau, Jing Zhu, Stanley R Hamilton, Gad Getz, Carrie Sougnez, Scott Abbott, Rachel Abbott, Nathan D Dees, Kim Delehaunty, Li Ding, David J Dooling, Jim M Eldred, Catrina C Fronick, Robert Fulton, Lucinda L Fulton, Joelle Kalicki-Veizer, Krishna-Latha Kanchi, Cyriac Kandoth, Daniel C Koboldt, David E Larson, Timothy J Ley, Ling Lin, Charles Lu, Vincent J Magrini, Elaine R Mardis, Michael D McLellan, Joshua F McMichael, Christopher A Miller, Michelle O'Laughlin, Craig Pohl, Heather Schmidt, Scott M Smith, Jason Walker, John W Wallis, Michael C Wendl, Richard K Wilson, Todd Wylie, Qunyuan Zhang, Robert Burton, Mark A Jensen, Ari Kahn, Todd Pihl, David Pot, Yunhu Wan, Douglas A Levine, Aaron D Black, Jay Bowen, Jessica Frick, Julie M Gastier-Foster, Hollie A Harper, Carmen Helsel, Kristen M Leraas, Tara M Lichtenberg, Cynthia McAllister, Nilsa C Ramirez, Samantha Sharpe, Lisa Wise, Erik Zmuda, Stephen J Chanock, Tanja Davidsen, John A Demchok, Greg Eley, Ina Felau, Brad A Ozenberger, Margi Sheth, Heidi Sofia, Louis Staudt, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jiashan Zhang, Larsson Omberg, Adam Margolin, Benjamin J Raphael, Fabio Vandin, Hsin-Ta Wu, Mark D M Leiserson, Stephen C Benz, Charles J Vaske, Houtan Noushmehr, Theo Knijnenburg, Denise Wolf, Laura Van't Veer, Eric A Collisson, Dimitris Anastassiou, Tai-Hsien Ou Yang, Nuria Lopez-Bigas, Abel Gonzalez-Perez, David Tamborero, Zheng Xia, Wei Li, Dong-Yeon Cho, Teresa Przytycka, Mark Hamilton, Sean McGuire, Sven Nelander, Patrik Johansson, Rebecka Jörnsten, Teresia Kling, Jose Sanchez

ABSTRACT

Current clinical practice is organized according to tissue or organ of origin of tumors. Now, The Cancer Genome Atlas (TCGA) Research Network has started to identify genomic and other molecular commonalities among a dozen different types of cancer. Emerging similarities and contrasts will form the basis for targeted therapies of the future and for repurposing existing therapies by molecular rather than histological similarities of the diseases. More... »

PAGES

1113-1120

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  • Journal

    TITLE

    Nature Genetics

    ISSUE

    10

    VOLUME

    45

    Author Affiliations

  • Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
  • Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, British Columbia, Canada
  • School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada
  • The Eli and Edythe L. Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts, USA
  • Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA
  • Dana-Farber Cancer Institute, Boston, Massachusetts, USA
  • Harvard-MIT Division of Health Sciences & Technology, Cambridge, Massachusetts, USA
  • Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA
  • Biophysics Program, Harvard University, Boston, Massachusetts, USA
  • Department of Genomic Medicine, Institute for Applied Cancer Science, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
  • The Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA
  • Harvard Medical School–Partners HealthCare Center for Genetics and Genomics, Boston, Massachusetts, USA
  • Informatics Program, Children's Hospital, Boston, Massachusetts, USA
  • Center for Statistical Science, Peking University, Beijing, China
  • Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Research Computing Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Department of Internal Medicine, Division of Medical Oncology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
  • Cancer Biology Division, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, Baltimore, Maryland, USA
  • USC Epigenome Center, University of Southern California Keck School of Medicine, Los Angeles, California, USA
  • The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, Baltimore, Maryland, USA
  • Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts, USA
  • Department of Biology and Biochemistry, University of Houston, Houston, Texas, USA
  • Institute for Systems Biology, Seattle, Washington, USA
  • Department of Pathology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • Department of Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • In Silico Solutions, Fairfax, Virginia, USA
  • Baylor College of Medicine, Houston, Texas, USA
  • Department of Urology, Baylor College of Medicine, Houston, Texas, USA
  • Department of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • Division of Biostatistics, University of Texas Health Science Center at Houston, School of Public Health, Houston, Texas, USA
  • Neuro-Oncology Department, University of Texas MD Anderson Cancer Center, Houston, Texas, USA
  • Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, Texas, USA
  • SRA International, Inc., Fairfax, Virginia, USA
  • Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, USA
  • Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA
  • Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, New York, USA
  • Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, California, USA
  • Molecular & Medical Genetics, Oregon Health & Science University, Portland, Oregon, USA
  • Buck Institute for Research on Aging, Novato, California, USA
  • Center for Biomolecular Science and Engineering, University of California, Santa Cruz, Santa Cruz, California, USA
  • Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, California, USA
  • The Genome Institute, Washington University, St. Louis, Missouri, USA
  • Siteman Cancer Center, Washington University, St. Louis, Missouri, USA
  • Division of Oncology, Washington University, St. Louis, Missouri, USA
  • Department of Genetics, Washington University, St. Louis, Missouri, USA
  • Department of Mathematics, Washington University, St. Louis, Missouri, USA
  • SAIC-Frederick, Inc., Frederick, Maryland, USA
  • Department of Surgery, Gynecology Service, Memorial Sloan-Kettering Cancer Center, New York, New York, USA
  • The Research Institute at Nationwide Children's Hospital, Columbus, Ohio, USA
  • The Ohio State University, Columbus, Ohio, USA
  • National Cancer Institute, US National Institutes of Health, Bethesda, Maryland, USA
  • Scimentis, Statham, Georgia, USA
  • National Human Genome Research Institute, US National Institutes of Health, Bethesda, Maryland, USA
  • Sage Bionetworks, Seattle, Washington, USA
  • Department of Computer Science, Brown University, Providence, Rhode Island, USA
  • Five3 Genomics, LLC, Santa Cruz, California, USA
  • Center for Integrative Systems Biology (CISBi), NAP/USP, São Paulo, Brazil
  • Department of Laboratory Medicine, University of California, San Francisco, San Francisco, California, USA
  • Department of Medicine, University of California, San Francisco, San Francisco, California, USA
  • Department of Electrical Engineering, Columbia University, New York, New York, USA
  • Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
  • Department of Experimental and Health Sciences, Research Unit on Biomedical Informatics, Universitat Pompeu Fabra, Barcelona, Spain
  • Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas, USA
  • National Center for Biotechnology Information, National Library of Medicine, US National Institutes of Health, Bethesda, Maryland, USA
  • Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA
  • Science for Life Laboratory, Uppsala University, Uppsala, Sweden
  • Mathematical Sciences, University of Gothenburg/Chalmers, Gothenburg, Sweden
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ng.2764

    DOI

    http://dx.doi.org/10.1038/ng.2764

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1033967678

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24071849


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