Ontology type: schema:ScholarlyArticle
2013-09
AUTHORSArturo Marí-Ordóñez, Antonin Marchais, Mathilde Etcheverry, Antoine Martin, Vincent Colot, Olivier Voinnet
ABSTRACTTransposable elements (TEs) contribute to genome size, organization and evolution. In plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually investigated at steady states, reflecting how long-established silent conditions are maintained, faithfully reiterated or temporarily modified. How active, invasive TEs are detected and silenced de novo in plants remains largely unknown. Using inbred lineages of hybrid Arabidopsis thaliana epigenomes combining wild-type and mutant chromosomes, we have deciphered the sequence of physiological and molecular events underlying the de novo invasion, proliferation and eventual demise of the single-copy endogenous retrotransposon Evadé (EVD). We show how this reconstructed TE burst causes widespread genome diversification and de novo epiallelism that could serve as sources for selectable and potentially adaptive traits. More... »
PAGES1029-1039
http://scigraph.springernature.com/pub.10.1038/ng.2703
DOIhttp://dx.doi.org/10.1038/ng.2703
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1048846264
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/23852169
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Arabidopsis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA Methylation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Epigenesis, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Dosage",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Plant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Order",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Silencing",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Plant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Host-Pathogen Interactions",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Models, Biological",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Nucleocapsid Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phenotype",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plants",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA Interference",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA, Messenger",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Retroelements",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Terminal Repeat Sequences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transcription, Genetic",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Zurich",
"id": "https://www.grid.ac/institutes/grid.7400.3",
"name": [
"Swiss Federal Institute of Technology (ETH-Z), Department of Biology, Zurich, Switzerland.",
"Life Science Zurich Graduate School, Molecular Life Science Program, University of Zurich, Zurich, Switzerland."
],
"type": "Organization"
},
"familyName": "Mar\u00ed-Ord\u00f3\u00f1ez",
"givenName": "Arturo",
"id": "sg:person.01246227740.93",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01246227740.93"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Swiss Federal Institute of Technology in Zurich",
"id": "https://www.grid.ac/institutes/grid.5801.c",
"name": [
"Swiss Federal Institute of Technology (ETH-Z), Department of Biology, Zurich, Switzerland."
],
"type": "Organization"
},
"familyName": "Marchais",
"givenName": "Antonin",
"id": "sg:person.0706012047.36",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0706012047.36"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure",
"id": "https://www.grid.ac/institutes/grid.462036.5",
"name": [
"Institut de Biologie de l'Ecole Normale Sup\u00e9rieure (IBENS), Centre National de la Recherche Scientifique (CNRS) Unit\u00e9 Mixte de Recherche (UMR) 8197 and Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) U1024, Paris, France."
],
"type": "Organization"
},
"familyName": "Etcheverry",
"givenName": "Mathilde",
"id": "sg:person.01271326104.94",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271326104.94"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Biochemistry and Plant Molecular Physiology",
"id": "https://www.grid.ac/institutes/grid.461861.c",
"name": [
"Institut de Biologie de l'Ecole Normale Sup\u00e9rieure (IBENS), Centre National de la Recherche Scientifique (CNRS) Unit\u00e9 Mixte de Recherche (UMR) 8197 and Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) U1024, Paris, France.",
"Present address: Institut de Biologie Int\u00e9grative des Plantes (IBIP), Biochimie et Physiologie Mol\u00e9culaire des Plantes, UMR 5004 CNRS, Institut National de la Recherche Agronomique (INRA), SupAgro, UM2, Montpellier, France."
],
"type": "Organization"
},
"familyName": "Martin",
"givenName": "Antoine",
"id": "sg:person.01041662464.05",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041662464.05"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure",
"id": "https://www.grid.ac/institutes/grid.462036.5",
"name": [
"Institut de Biologie de l'Ecole Normale Sup\u00e9rieure (IBENS), Centre National de la Recherche Scientifique (CNRS) Unit\u00e9 Mixte de Recherche (UMR) 8197 and Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) U1024, Paris, France."
],
"type": "Organization"
},
"familyName": "Colot",
"givenName": "Vincent",
"id": "sg:person.01320727743.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01320727743.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Zurich",
"id": "https://www.grid.ac/institutes/grid.7400.3",
"name": [
"Swiss Federal Institute of Technology (ETH-Z), Department of Biology, Zurich, Switzerland.",
"Life Science Zurich Graduate School, Molecular Life Science Program, University of Zurich, Zurich, Switzerland."
],
"type": "Organization"
},
"familyName": "Voinnet",
"givenName": "Olivier",
"id": "sg:person.0667206414.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0667206414.15"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1371/journal.pgen.1000530",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000113856"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08351",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001038184",
"https://doi.org/10.1038/nature08351"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08351",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001038184",
"https://doi.org/10.1038/nature08351"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0070-2153(08)60316-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002094303"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2004-5-10-r79",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002275898",
"https://doi.org/10.1186/gb-2004-5-10-r79"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0506426102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002613868"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng.942",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002924391",
"https://doi.org/10.1038/ng.942"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.010480",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003065168"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.1231804",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003418073"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-9-371",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003626384",
"https://doi.org/10.1186/1471-2105-9-371"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkl180",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007759892"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tplants.2008.05.004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008424940"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2008.12.038",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008615511"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.113.216481",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009113816"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1211757110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009344148"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1996.10010071.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009551327"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2004-5-10-r78",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011140638",
"https://doi.org/10.1186/gb-2004-5-10-r78"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0904086107",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011482989"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkl886",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011827032"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/emboj.2012.92",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013159961"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00343.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013777935"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.524609",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014829576"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.110.157610",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015075456"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2005.06.014",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015499694"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.chom.2010.06.009",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015516756"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pbio.0020104",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015587795"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ydbio.2010.07.016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015774541"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkq1061",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017494830"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1360-1385(02)02251-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018012577"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.103.023796",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019770517"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng.365",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021902136",
"https://doi.org/10.1038/ng.365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ymeth.2007.05.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022240326"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ymeth.2007.05.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022240326"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.hdy.6800903",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022512254",
"https://doi.org/10.1038/sj.hdy.6800903"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.hdy.6800903",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022512254",
"https://doi.org/10.1038/sj.hdy.6800903"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.108.117846",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022745970"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2012.07.028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022867329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp352",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023014918"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ceb.2009.01.025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024140889"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/tpj.12034",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026721846"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08328",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027203979",
"https://doi.org/10.1038/nature08328"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08328",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027203979",
"https://doi.org/10.1038/nature08328"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1139/g00-058",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027901335"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature09861",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028281137",
"https://doi.org/10.1038/nature09861"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nprot.2008.67",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030475776",
"https://doi.org/10.1038/nprot.2008.67"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00029153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031933032",
"https://doi.org/10.1007/bf00029153"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00029153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031933032",
"https://doi.org/10.1007/bf00029153"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2013.02.033",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032630965"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng2081",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033768664",
"https://doi.org/10.1038/ng2081"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1580",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034310095",
"https://doi.org/10.1038/ng1580"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1580",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034310095",
"https://doi.org/10.1038/ng1580"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1580",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034310095",
"https://doi.org/10.1038/ng1580"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cub.2005.07.024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034949532"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btq033",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036892131"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0029785",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037017094"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1138",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037837624",
"https://doi.org/10.1038/ng1138"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1138",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037837624",
"https://doi.org/10.1038/ng1138"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.009407",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038036578"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.110.082305",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038703071"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.1908710",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038966504"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1079/ivp2001278",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039902788",
"https://doi.org/10.1079/ivp2001278"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1804",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041734956",
"https://doi.org/10.1038/ng1804"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1804",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041734956",
"https://doi.org/10.1038/ng1804"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/tpj.12172",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043903984"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp033",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044035298"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2012.07.027",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045151910"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-006-9125-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045677200",
"https://doi.org/10.1007/s11103-006-9125-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-013-0041-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048426334",
"https://doi.org/10.1007/s11103-013-0041-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-013-0041-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048426334",
"https://doi.org/10.1007/s11103-013-0041-4"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2012.10.054",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049085610"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2003.01676.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049475720"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2009-10-3-r25",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049583368",
"https://doi.org/10.1186/gb-2009-10-3-r25"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/emboj.2010.65",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050296915"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/0471142727.mb0203s27",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051835801"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.arplant.59.032607.092744",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051904467"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/emboj.2008.260",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052165686"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1153040",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052501052"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1209329109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052854267"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jvi.02207-06",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053242283"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/sqb.1956.021.01.017",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060403222"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1128214",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062453840"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1165313",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062458966"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.8316832",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062654636"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4161/epi.5.1.10560",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072302968"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1075259843",
"type": "CreativeWork"
}
],
"datePublished": "2013-09",
"datePublishedReg": "2013-09-01",
"description": "Transposable elements (TEs) contribute to genome size, organization and evolution. In plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually investigated at steady states, reflecting how long-established silent conditions are maintained, faithfully reiterated or temporarily modified. How active, invasive TEs are detected and silenced de novo in plants remains largely unknown. Using inbred lineages of hybrid Arabidopsis thaliana epigenomes combining wild-type and mutant chromosomes, we have deciphered the sequence of physiological and molecular events underlying the de novo invasion, proliferation and eventual demise of the single-copy endogenous retrotransposon Evad\u00e9 (EVD). We show how this reconstructed TE burst causes widespread genome diversification and de novo epiallelism that could serve as sources for selectable and potentially adaptive traits. ",
"genre": "research_article",
"id": "sg:pub.10.1038/ng.2703",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1103138",
"issn": [
"1061-4036",
"1546-1718"
],
"name": "Nature Genetics",
"type": "Periodical"
},
{
"issueNumber": "9",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "45"
}
],
"name": "Reconstructing de novo silencing of an active plant retrotransposon",
"pagination": "1029-1039",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"e8b1cc8627238ced6057c29a8e2380ef2267fc786b3798759fbe5d5a0be18f00"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"23852169"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"9216904"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/ng.2703"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1048846264"
]
}
],
"sameAs": [
"https://doi.org/10.1038/ng.2703",
"https://app.dimensions.ai/details/publication/pub.1048846264"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T00:04",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8695_00000426.jsonl",
"type": "ScholarlyArticle",
"url": "http://www.nature.com/ng/journal/v45/n9/full/ng.2703.html"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/ng.2703'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/ng.2703'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/ng.2703'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/ng.2703'
This table displays all metadata directly associated to this object as RDF triples.
430 TRIPLES
21 PREDICATES
122 URIs
39 LITERALS
27 BLANK NODES