Improved Estimation of Secondary Structure in Ribonucleic Acids View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1973-11

AUTHORS

IGNACIO TINOCO, PHILIP N. BORER, BARBARA DENGLER, MARK D. LEVINE, OLKE C. UHLENBECK, DONALD M. CROTHERS, JAY GRALLA

ABSTRACT

A SIMPLE method for estimating the most stable secondary structure of an RNA molecule from its sequence was proposed earlier1. This method can be used for predicting and assessing possible secondary structures for recently determined RNA sequences2–4. New experimental5–8 and theoretical9, 10 results allow us to improve the method, without making it more complicated. More... »

PAGES

40-41

Journal

TITLE

Nature

ISSUE

150

VOLUME

246

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/newbio246040a0

DOI

http://dx.doi.org/10.1038/newbio246040a0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1018988773

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/4519026


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Models, Chemical", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nucleic Acid Conformation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Oligonucleotides", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Thermodynamics", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 94720, Berkeley, California", 
          "id": "http://www.grid.ac/institutes/grid.47840.3f", 
          "name": [
            "Department of Chemistry, University of California, 94720, Berkeley, California"
          ], 
          "type": "Organization"
        }, 
        "familyName": "TINOCO", 
        "givenName": "IGNACIO", 
        "id": "sg:person.01001201301.89", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001201301.89"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 94720, Berkeley, California", 
          "id": "http://www.grid.ac/institutes/grid.47840.3f", 
          "name": [
            "Department of Chemistry, University of California, 94720, Berkeley, California"
          ], 
          "type": "Organization"
        }, 
        "familyName": "BORER", 
        "givenName": "PHILIP N.", 
        "id": "sg:person.01262003125.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262003125.23"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 94720, Berkeley, California", 
          "id": "http://www.grid.ac/institutes/grid.47840.3f", 
          "name": [
            "Department of Chemistry, University of California, 94720, Berkeley, California"
          ], 
          "type": "Organization"
        }, 
        "familyName": "DENGLER", 
        "givenName": "BARBARA", 
        "id": "sg:person.0112721107.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0112721107.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 94720, Berkeley, California", 
          "id": "http://www.grid.ac/institutes/grid.47840.3f", 
          "name": [
            "Department of Chemistry, University of California, 94720, Berkeley, California"
          ], 
          "type": "Organization"
        }, 
        "familyName": "LEVINE", 
        "givenName": "MARK D.", 
        "id": "sg:person.056325005.33", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.056325005.33"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biochemistry Department, University of Illinois, 61801, Urbana, Illinois", 
          "id": "http://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Biochemistry Department, University of Illinois, 61801, Urbana, Illinois"
          ], 
          "type": "Organization"
        }, 
        "familyName": "UHLENBECK", 
        "givenName": "OLKE C.", 
        "id": "sg:person.01244046266.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01244046266.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, Yale University, 06520, New Haven, Connecticut", 
          "id": "http://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Chemistry, Yale University, 06520, New Haven, Connecticut"
          ], 
          "type": "Organization"
        }, 
        "familyName": "CROTHERS", 
        "givenName": "DONALD M.", 
        "id": "sg:person.015167711604.62", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015167711604.62"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, Yale University, 06520, New Haven, Connecticut", 
          "id": "http://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Chemistry, Yale University, 06520, New Haven, Connecticut"
          ], 
          "type": "Organization"
        }, 
        "familyName": "GRALLA", 
        "givenName": "JAY", 
        "id": "sg:person.0110366127.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0110366127.37"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/230362a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050544910", 
          "https://doi.org/10.1038/230362a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/2231009a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004026130", 
          "https://doi.org/10.1038/2231009a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/237082a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034227310", 
          "https://doi.org/10.1038/237082a0"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1973-11", 
    "datePublishedReg": "1973-11-01", 
    "description": "A SIMPLE method for estimating the most stable secondary structure of an RNA molecule from its sequence was proposed earlier1. This method can be used for predicting and assessing possible secondary structures for recently determined RNA sequences2\u20134. New experimental5\u20138 and theoretical9, 10 results allow us to improve the method, without making it more complicated.", 
    "genre": "article", 
    "id": "sg:pub.10.1038/newbio246040a0", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018957", 
        "issn": [
          "0028-0836", 
          "1476-4687"
        ], 
        "name": "Nature", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "150", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "246"
      }
    ], 
    "keywords": [
      "secondary structure", 
      "stable secondary structure", 
      "simple method", 
      "structure", 
      "molecules", 
      "RNA molecules", 
      "acid", 
      "method", 
      "earlier1", 
      "possible secondary structures", 
      "ribonucleic acid", 
      "results", 
      "sequence", 
      "improved estimation", 
      "estimation", 
      "RNA sequences2\u20134", 
      "sequences2\u20134", 
      "New experimental5\u20138", 
      "experimental5\u20138", 
      "theoretical9"
    ], 
    "name": "Improved Estimation of Secondary Structure in Ribonucleic Acids", 
    "pagination": "40-41", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1018988773"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/newbio246040a0"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "4519026"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/newbio246040a0", 
      "https://app.dimensions.ai/details/publication/pub.1018988773"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-01-01T18:01", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220101/entities/gbq_results/article/article_132.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/newbio246040a0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/newbio246040a0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/newbio246040a0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/newbio246040a0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/newbio246040a0'


 

This table displays all metadata directly associated to this object as RDF triples.

169 TRIPLES      21 PREDICATES      56 URIs      45 LITERALS      14 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/newbio246040a0 schema:about N1be1b48bbb214a3d8fe5b975d3f391ca
2 N3e06b563604f4dec9ab6cc29389f6f6c
3 N530c8113a199422496afaf444b783ea1
4 N6f434b163128405da47275367d31b710
5 Na40750f87178414db5775167cb67ed7a
6 Nd68e931205b147cea1642682fd685ca5
7 Nfbdb2e22ffeb4d1483f14fa6ce513ce4
8 anzsrc-for:06
9 anzsrc-for:0604
10 schema:author Nafa4c2b80e3f469281ee1bb55cb58b33
11 schema:citation sg:pub.10.1038/2231009a0
12 sg:pub.10.1038/230362a0
13 sg:pub.10.1038/237082a0
14 schema:datePublished 1973-11
15 schema:datePublishedReg 1973-11-01
16 schema:description A SIMPLE method for estimating the most stable secondary structure of an RNA molecule from its sequence was proposed earlier1. This method can be used for predicting and assessing possible secondary structures for recently determined RNA sequences2–4. New experimental5–8 and theoretical9, 10 results allow us to improve the method, without making it more complicated.
17 schema:genre article
18 schema:isAccessibleForFree false
19 schema:isPartOf N0340a97ce5634352b8352e5f1698725d
20 Nbb893166a5b940c39cfcd92860ab1a1b
21 sg:journal.1018957
22 schema:keywords New experimental5–8
23 RNA molecules
24 RNA sequences2–4
25 acid
26 earlier1
27 estimation
28 experimental5–8
29 improved estimation
30 method
31 molecules
32 possible secondary structures
33 results
34 ribonucleic acid
35 secondary structure
36 sequence
37 sequences2–4
38 simple method
39 stable secondary structure
40 structure
41 theoretical9
42 schema:name Improved Estimation of Secondary Structure in Ribonucleic Acids
43 schema:pagination 40-41
44 schema:productId N52f9d278ff0940549dc04cc715f12673
45 Nba2e9c8a9afc4a338fdf654c7a3a2c24
46 Ne82ed67d60bd4280b0dc9d94e0c43f51
47 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018988773
48 https://doi.org/10.1038/newbio246040a0
49 schema:sdDatePublished 2022-01-01T18:01
50 schema:sdLicense https://scigraph.springernature.com/explorer/license/
51 schema:sdPublisher N0e8fb72cb68d4903bae94c833a698947
52 schema:url https://doi.org/10.1038/newbio246040a0
53 sgo:license sg:explorer/license/
54 sgo:sdDataset articles
55 rdf:type schema:ScholarlyArticle
56 N0340a97ce5634352b8352e5f1698725d schema:issueNumber 150
57 rdf:type schema:PublicationIssue
58 N0e8fb72cb68d4903bae94c833a698947 schema:name Springer Nature - SN SciGraph project
59 rdf:type schema:Organization
60 N1be1b48bbb214a3d8fe5b975d3f391ca schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
61 schema:name Thermodynamics
62 rdf:type schema:DefinedTerm
63 N3e06b563604f4dec9ab6cc29389f6f6c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
64 schema:name RNA
65 rdf:type schema:DefinedTerm
66 N43fc7cf8b6034b939e8c969aab323228 rdf:first sg:person.01262003125.23
67 rdf:rest Ndc3a0256fe3340ec9ccc951a2772dea9
68 N47a2cfd8eb6e474f8072a6e6eb9983c2 rdf:first sg:person.015167711604.62
69 rdf:rest Ne3f930b6947249e39738d814460fb32f
70 N52f9d278ff0940549dc04cc715f12673 schema:name dimensions_id
71 schema:value pub.1018988773
72 rdf:type schema:PropertyValue
73 N530c8113a199422496afaf444b783ea1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
74 schema:name Oligonucleotides
75 rdf:type schema:DefinedTerm
76 N6f434b163128405da47275367d31b710 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
77 schema:name RNA, Viral
78 rdf:type schema:DefinedTerm
79 Na40750f87178414db5775167cb67ed7a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name Base Sequence
81 rdf:type schema:DefinedTerm
82 Nafa4c2b80e3f469281ee1bb55cb58b33 rdf:first sg:person.01001201301.89
83 rdf:rest N43fc7cf8b6034b939e8c969aab323228
84 Nb519c4ea4ba049e8b38ec3530ca263d3 rdf:first sg:person.01244046266.38
85 rdf:rest N47a2cfd8eb6e474f8072a6e6eb9983c2
86 Nba2e9c8a9afc4a338fdf654c7a3a2c24 schema:name pubmed_id
87 schema:value 4519026
88 rdf:type schema:PropertyValue
89 Nbb893166a5b940c39cfcd92860ab1a1b schema:volumeNumber 246
90 rdf:type schema:PublicationVolume
91 Nc5f5aa8d0e0c4eb182521720fd62793a rdf:first sg:person.056325005.33
92 rdf:rest Nb519c4ea4ba049e8b38ec3530ca263d3
93 Nd68e931205b147cea1642682fd685ca5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
94 schema:name Models, Chemical
95 rdf:type schema:DefinedTerm
96 Ndc3a0256fe3340ec9ccc951a2772dea9 rdf:first sg:person.0112721107.02
97 rdf:rest Nc5f5aa8d0e0c4eb182521720fd62793a
98 Ne3f930b6947249e39738d814460fb32f rdf:first sg:person.0110366127.37
99 rdf:rest rdf:nil
100 Ne82ed67d60bd4280b0dc9d94e0c43f51 schema:name doi
101 schema:value 10.1038/newbio246040a0
102 rdf:type schema:PropertyValue
103 Nfbdb2e22ffeb4d1483f14fa6ce513ce4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
104 schema:name Nucleic Acid Conformation
105 rdf:type schema:DefinedTerm
106 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
107 schema:name Biological Sciences
108 rdf:type schema:DefinedTerm
109 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
110 schema:name Genetics
111 rdf:type schema:DefinedTerm
112 sg:journal.1018957 schema:issn 0028-0836
113 1476-4687
114 schema:name Nature
115 schema:publisher Springer Nature
116 rdf:type schema:Periodical
117 sg:person.01001201301.89 schema:affiliation grid-institutes:grid.47840.3f
118 schema:familyName TINOCO
119 schema:givenName IGNACIO
120 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001201301.89
121 rdf:type schema:Person
122 sg:person.0110366127.37 schema:affiliation grid-institutes:grid.47100.32
123 schema:familyName GRALLA
124 schema:givenName JAY
125 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0110366127.37
126 rdf:type schema:Person
127 sg:person.0112721107.02 schema:affiliation grid-institutes:grid.47840.3f
128 schema:familyName DENGLER
129 schema:givenName BARBARA
130 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0112721107.02
131 rdf:type schema:Person
132 sg:person.01244046266.38 schema:affiliation grid-institutes:grid.35403.31
133 schema:familyName UHLENBECK
134 schema:givenName OLKE C.
135 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01244046266.38
136 rdf:type schema:Person
137 sg:person.01262003125.23 schema:affiliation grid-institutes:grid.47840.3f
138 schema:familyName BORER
139 schema:givenName PHILIP N.
140 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262003125.23
141 rdf:type schema:Person
142 sg:person.015167711604.62 schema:affiliation grid-institutes:grid.47100.32
143 schema:familyName CROTHERS
144 schema:givenName DONALD M.
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015167711604.62
146 rdf:type schema:Person
147 sg:person.056325005.33 schema:affiliation grid-institutes:grid.47840.3f
148 schema:familyName LEVINE
149 schema:givenName MARK D.
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.056325005.33
151 rdf:type schema:Person
152 sg:pub.10.1038/2231009a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004026130
153 https://doi.org/10.1038/2231009a0
154 rdf:type schema:CreativeWork
155 sg:pub.10.1038/230362a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050544910
156 https://doi.org/10.1038/230362a0
157 rdf:type schema:CreativeWork
158 sg:pub.10.1038/237082a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034227310
159 https://doi.org/10.1038/237082a0
160 rdf:type schema:CreativeWork
161 grid-institutes:grid.35403.31 schema:alternateName Biochemistry Department, University of Illinois, 61801, Urbana, Illinois
162 schema:name Biochemistry Department, University of Illinois, 61801, Urbana, Illinois
163 rdf:type schema:Organization
164 grid-institutes:grid.47100.32 schema:alternateName Department of Chemistry, Yale University, 06520, New Haven, Connecticut
165 schema:name Department of Chemistry, Yale University, 06520, New Haven, Connecticut
166 rdf:type schema:Organization
167 grid-institutes:grid.47840.3f schema:alternateName Department of Chemistry, University of California, 94720, Berkeley, California
168 schema:name Department of Chemistry, University of California, 94720, Berkeley, California
169 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...